Variant report

Variant	rs17864965
Chromosome Location	chr7:126867534-126867535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17864153	1.00[CHB][hapmap]
rs17865865	1.00[CHB][hapmap]
rs17865991	1.00[CHB][hapmap]
rs17866032	1.00[CHB][hapmap]
rs17866043	1.00[CHB][hapmap]
rs17866146	1.00[CHB][hapmap]
rs17867153	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126866800-126867600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:126866800-126868000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:126867000-126868400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:126867200-126869200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:126867400-126867800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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