Variant report

Variant	rs17865120
Chromosome Location	chr4:118743375-118743376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28945124	1.00[ASN][1000 genomes]
rs35922174	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118742000-118743400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:118742200-118743400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:118742400-118743400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:118742400-118744000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:118742800-118743400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:118743000-118743600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr4:118743200-118743400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:118743200-118744000	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links