Variant report
| Variant | rs17867508 |
|---|---|
| Chromosome Location | chr4:118513308-118513309 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NDST3-9 | chr4:118512935-118513347 | l_2711_chr4:118501151-118513199_testes |
| 2 | lnc-NDST3-9 | chr4:118512968-118513339 | NONHSAT097963 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs17862039 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2389380 | 0.93[GIH][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6839718 | 0.93[GIH][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879832 | chr4:118502728-118536051 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | esv1825113 | chr4:118505427-118544235 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv879833 | chr4:118510812-118556306 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17867508 | NDST3 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
