Variant report

Variant	rs17867838
Chromosome Location	chr7:127007978-127007979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127007429..127009015-chr7:127025280..127028276,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17862354	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862363	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862366	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862377	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17864188	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864190	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867833	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867837	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971514	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017145	chr7:126995304-127015459	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
2	chr7:126988400-127012600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:126988400-127013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:126988400-127013000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:126988400-127013200	Weak transcription	NHEK	skin
6	chr7:126988400-127013400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:126988400-127014000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
9	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
11	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
12	chr7:126988600-127013400	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
14	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:126994000-127019800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr7:126995400-127022600	Strong transcription	Dnd41	blood
17	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:126996200-127013000	Weak transcription	Ovary	ovary
19	chr7:126996800-127010600	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr7:126996800-127013400	Weak transcription	Fetal Kidney	kidney
21	chr7:126997000-127012800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
23	chr7:126998200-127020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:126998600-127010000	Strong transcription	Primary hematopoietic stem cells	blood
25	chr7:126998600-127013800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:126999200-127013400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:126999200-127018000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:126999400-127013000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:126999600-127013400	Weak transcription	Fetal Brain Female	brain
32	chr7:126999600-127023200	Weak transcription	Small Intestine	intestine
33	chr7:126999800-127010000	Strong transcription	Fetal Thymus	thymus
34	chr7:126999800-127010200	Strong transcription	Primary T cells from cord blood	blood
35	chr7:127000200-127019600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr7:127000400-127013200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:127001400-127011400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:127001400-127013200	Weak transcription	Brain Hippocampus Middle	brain
39	chr7:127001600-127009000	Weak transcription	Left Ventricle	heart
40	chr7:127001600-127009200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:127001600-127011200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:127001600-127013000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr7:127001600-127013000	Weak transcription	HepG2	liver
44	chr7:127001600-127013000	Weak transcription	NHLF	lung
45	chr7:127001600-127013200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr7:127001600-127013800	Weak transcription	Lung	lung
47	chr7:127001600-127013800	Weak transcription	Thymus	Thymus
48	chr7:127001600-127023200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:127001600-127029000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links