Variant report

Variant	rs17868396
Chromosome Location	chr2:234892467-234892468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1016062	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11691335	0.82[AFR][1000 genomes]
rs17864759	0.82[EUR][1000 genomes]
rs17864764	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs28948672	0.82[EUR][1000 genomes]
rs28948673	0.82[EUR][1000 genomes]
rs728671	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234886200-234898000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:234886200-234898200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:234886400-234901200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:234887800-234892600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:234888200-234892800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:234888600-234892800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:234889200-234892600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:234890000-234892600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:234891400-234892800	Enhancers	HMEC	breast
10	chr2:234891800-234892800	Genic enhancers	Liver	Liver
11	chr2:234891800-234892800	Enhancers	NHDF-Ad	bronchial
12	chr2:234891800-234893400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:234892000-234893200	Weak transcription	Fetal Brain Male	brain
14	chr2:234892200-234897200	Weak transcription	NHLF	lung
15	chr2:234892400-234892600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:234892400-234893000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:234892400-234901000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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