The 2.0 version of rSNPBase

Variant report

Variant rs17878692
Chromosome Location chr1:94362388-94362389
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94345000-94374200 Weak transcription Gastric stomach
2 chr1:94345000-94374200 Weak transcription Spleen Spleen
3 chr1:94345200-94374000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:94345200-94374200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:94345400-94364000 Weak transcription Fetal Intestine Small intestine
6 chr1:94345400-94369400 Weak transcription Colonic Mucosa Colon
7 chr1:94345400-94373200 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:94345400-94373200 Weak transcription Brain Substantia Nigra brain
9 chr1:94345400-94373800 Weak transcription Fetal Stomach stomach
10 chr1:94345400-94374000 Weak transcription Right Ventricle heart
11 chr1:94345600-94369400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:94345600-94369400 Weak transcription Fetal Lung lung
13 chr1:94345600-94369800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr1:94345600-94371600 Weak transcription Fetal Kidney kidney
15 chr1:94345600-94373000 Weak transcription Fetal Brain Female brain
16 chr1:94345600-94373200 Weak transcription Brain Cingulate Gyrus brain
17 chr1:94345600-94373200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr1:94345600-94373200 Weak transcription Fetal Brain Male brain
19 chr1:94345600-94373400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:94345600-94373400 Weak transcription Psoas Muscle Psoas
21 chr1:94345600-94373400 Weak transcription Stomach Mucosa stomach
22 chr1:94345600-94373600 Weak transcription Brain Germinal Matrix brain
23 chr1:94345800-94366000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr1:94345800-94369200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:94345800-94371200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:94347400-94374200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:94347600-94367600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:94350400-94367200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:94350600-94369400 Strong transcription HMEC breast
30 chr1:94351200-94364600 Strong transcription Primary neutrophils fromperipheralblood blood
31 chr1:94351200-94367400 Strong transcription Liver Liver
32 chr1:94352800-94370400 Weak transcription Lung lung
33 chr1:94352800-94373000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:94353000-94367400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:94353600-94363400 Strong transcription Dnd41 blood
36 chr1:94353600-94367200 Strong transcription Osteobl bone
37 chr1:94353600-94368200 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr1:94353800-94367200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:94354200-94370400 Weak transcription Small Intestine intestine
40 chr1:94354200-94372600 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:94354400-94367000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:94354600-94367000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:94354600-94373400 Weak transcription H9 Cell Line embryonic stem cell
44 chr1:94355800-94363800 Strong transcription NH-A brain
45 chr1:94356000-94367000 Strong transcription Adipose Nuclei Adipose
46 chr1:94356200-94362400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:94356200-94362800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
48 chr1:94356200-94362800 Strong transcription Duodenum Smooth Muscle Duodenum
49 chr1:94356200-94363400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr1:94356200-94363400 Strong transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015