Variant report

Variant	rs17878908
Chromosome Location	chr13:96444520-96444521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96437224..96440401-chr13:96442107..96444722,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17878379	1.00[AFR][1000 genomes]
rs17878553	1.00[AFR][1000 genomes]
rs17878672	1.00[AFR][1000 genomes]
rs17879452	0.80[AFR][1000 genomes]
rs17879622	1.00[AFR][1000 genomes]
rs17879680	1.00[AFR][1000 genomes]
rs17880149	1.00[AFR][1000 genomes]
rs17882141	1.00[AFR][1000 genomes]
rs17882315	1.00[AFR][1000 genomes]
rs17882465	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96405400-96452600	Weak transcription	Psoas Muscle	Psoas
2	chr13:96405600-96455800	Weak transcription	Fetal Heart	heart
3	chr13:96408600-96445400	Weak transcription	K562	blood
4	chr13:96416200-96445400	Weak transcription	Fetal Kidney	kidney
5	chr13:96430000-96457400	Weak transcription	Brain Germinal Matrix	brain
6	chr13:96433000-96453000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:96435000-96445800	Strong transcription	Primary B cells from cord blood	blood
8	chr13:96435000-96447800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr13:96435600-96447200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr13:96435800-96446800	Strong transcription	Primary T cells from cord blood	blood
11	chr13:96436000-96449000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr13:96436200-96446600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr13:96436200-96447000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr13:96436200-96452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:96436400-96444600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr13:96437000-96451400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:96437200-96444600	Weak transcription	A549	lung
18	chr13:96437200-96445000	Weak transcription	Aorta	Aorta
19	chr13:96437200-96445200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:96437400-96445800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr13:96437400-96448800	Strong transcription	Liver	Liver
22	chr13:96437600-96447200	Weak transcription	Stomach Mucosa	stomach
23	chr13:96437800-96445800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:96438000-96445400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr13:96438000-96445800	Strong transcription	Primary B cells from peripheral blood	blood
26	chr13:96438200-96450200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr13:96438400-96445800	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr13:96438400-96446800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr13:96438600-96445600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr13:96438600-96445600	Strong transcription	Fetal Thymus	thymus
31	chr13:96438600-96446800	Strong transcription	Placenta	Placenta
32	chr13:96438600-96447000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr13:96438800-96446800	Strong transcription	Dnd41	blood
34	chr13:96438800-96451200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr13:96439000-96445800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr13:96439000-96446800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr13:96439000-96447200	Strong transcription	Fetal Intestine Large	intestine
38	chr13:96439200-96446000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr13:96439200-96446400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr13:96439200-96446800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr13:96439200-96447000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:96439400-96445000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:96439400-96445600	Strong transcription	Lung	lung
44	chr13:96439400-96446800	Strong transcription	Left Ventricle	heart
45	chr13:96439400-96449000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:96439400-96450400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr13:96439800-96454200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr13:96440200-96445600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr13:96440200-96447000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr13:96440800-96445200	Weak transcription	NHEK	skin

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