Variant report

Variant	rs17880356
Chromosome Location	chr11:75109737-75109738
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75109252..75112429-chr11:75150436..75153898,3	MCF-7	breast:
2	chr11:73681017..73683540-chr11:75108485..75110869,2	MCF-7	breast:
3	chr11:75108861..75111951-chr11:75234433..75238212,4	K562	blood:
4	chr11:75109346..75112415-chr11:75273833..75276890,5	K562	blood:
5	chr11:75109278..75112345-chr11:75158089..75162369,4	K562	blood:
6	chr11:75061780..75064300-chr11:75109349..75111939,3	MCF-7	breast:
7	chr11:75109502..75112547-chr11:75141371..75143241,3	K562	blood:
8	chr11:75109502..75112547-chr11:75141371..75144789,4	K562	blood:
9	chr11:75013957..75016437-chr11:75109454..75111364,2	MCF-7	breast:
10	chr11:75109262..75112458-chr11:75235870..75238742,4	MCF-7	breast:
11	chr11:75109363..75113212-chr11:75271581..75274783,5	MCF-7	breast:
12	chr11:75108774..75112522-chr11:75157873..75162369,8	K562	blood:
13	chr11:75108861..75112568-chr11:75234338..75239079,8	K562	blood:
14	chr11:75017630..75020306-chr11:75109164..75110800,2	K562	blood:
15	chr11:74991337..74994595-chr11:75109481..75112048,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000149243	Chromatin interaction
ENSG00000137486	Chromatin interaction
ENSG00000255847	Chromatin interaction
ENSG00000149257	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17133945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17883225	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv1799276	chr11:75104200-75135434	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75100200-75110200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:75100400-75110400	Weak transcription	HSMMtube	muscle
3	chr11:75100600-75110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:75103200-75110200	Weak transcription	Hela-S3	cervix
5	chr11:75105600-75110200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:75106200-75110200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:75106200-75110200	Weak transcription	K562	blood
8	chr11:75106200-75110400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:75106600-75110400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:75106800-75110200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:75106800-75110400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:75106800-75110400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:75106800-75110400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:75107000-75110000	Weak transcription	HepG2	liver
15	chr11:75107000-75110400	Weak transcription	Brain Substantia Nigra	brain
16	chr11:75107000-75110600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:75107200-75110200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:75107200-75110400	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:75107400-75110200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:75107600-75110200	Weak transcription	Spleen	Spleen
21	chr11:75109600-75110200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr11:75109600-75110200	Enhancers	HUVEC	blood vessel
23	chr11:75109600-75110400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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