Variant report

Variant	rs17880492
Chromosome Location	chr14:65406343-65406344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65394304..65397990-chr14:65402248..65406876,4	MCF-7	breast:
2	chr14:65389378..65392294-chr14:65404948..65407840,2	K562	blood:
3	chr14:65404420..65406975-chr14:65439148..65440994,2	MCF-7	breast:
4	chr14:65289379..65292254-chr14:65404239..65406911,2	MCF-7	breast:
5	chr14:65381011..65382650-chr14:65404072..65406502,2	MCF-7	breast:
6	chr14:65404531..65408586-chr14:65450812..65454369,4	MCF-7	breast:
7	chr14:65404280..65406861-chr14:65436197..65439029,2	MCF-7	breast:
8	chr14:65398257..65401732-chr14:65403924..65406897,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000139998	Chromatin interaction
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000070182	Chromatin interaction
ENSG00000257365	Chromatin interaction

rs_ID	r²[population]
rs17180132	1.00[LWK][hapmap];1.00[MEX][hapmap]
rs17180350	1.00[LWK][hapmap]
rs3742602	1.00[LWK][hapmap];1.00[MEX][hapmap]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382000-65409200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65382400-65409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
5	chr14:65383000-65419400	Weak transcription	K562	blood
6	chr14:65386400-65409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:65390600-65409600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:65390600-65409800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr14:65390800-65407000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:65393800-65409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:65396000-65409600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:65396000-65410400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
15	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:65396200-65408200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr14:65397200-65407200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:65397400-65411200	Strong transcription	Dnd41	blood
19	chr14:65399000-65428000	Weak transcription	NHLF	lung
20	chr14:65399200-65412400	Weak transcription	Brain Germinal Matrix	brain
21	chr14:65400000-65410400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr14:65400000-65417000	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:65400400-65415200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr14:65400600-65407400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr14:65400600-65408000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr14:65400600-65409200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:65400800-65408800	Weak transcription	HMEC	breast
28	chr14:65400800-65410200	Weak transcription	Fetal Lung	lung
29	chr14:65401400-65407400	Weak transcription	Small Intestine	intestine
30	chr14:65401400-65409200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr14:65401400-65409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
33	chr14:65401600-65407000	Weak transcription	Hela-S3	cervix
34	chr14:65401600-65412400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:65401600-65413200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:65401600-65435000	Weak transcription	NH-A	brain
37	chr14:65401800-65409400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:65401800-65412600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:65402400-65415000	Weak transcription	Osteobl	bone
40	chr14:65402600-65408600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr14:65402600-65410200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr14:65403000-65412800	Strong transcription	Thymus	Thymus
43	chr14:65403200-65406800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:65403400-65408400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr14:65403400-65414600	Weak transcription	Left Ventricle	heart
46	chr14:65403800-65407400	Enhancers	Fetal Intestine Large	intestine
47	chr14:65404000-65407800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr14:65404000-65408600	Strong transcription	Primary B cells from cord blood	blood
49	chr14:65404000-65409600	Strong transcription	Primary T cells from cord blood	blood
50	chr14:65404000-65410600	Enhancers	Pancreas	Pancrea

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