Variant report

Variant	rs17881323
Chromosome Location	chr16:70500809-70500810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:70413020..70418181-chr16:70497448..70510572,26	MCF-7	breast:
2	chr16:70499787..70501643-chr16:70507798..70509638,2	K562	blood:

Variant related genes	Relation type
ENSG00000260111	Chromatin interaction
ENSG00000157353	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1065158	1.00[LWK][hapmap]
rs12923937	1.00[CHD][hapmap]
rs13332431	1.00[CHB][hapmap]
rs13334595	1.00[CHD][hapmap]
rs17878599	1.00[CHB][hapmap]
rs17881635	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs17883248	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap]
rs17883716	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17886060	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap]
rs28838669	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs34607244	1.00[LWK][hapmap]
rs7203007	1.00[CHD][hapmap]
rs9929354	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	esv1815154	chr16:70467819-70515355	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv906873	chr16:70495911-70509838	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1828600	chr16:70500809-70515355	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70489200-70506000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:70489200-70508800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:70489400-70504600	Weak transcription	A549	lung
4	chr16:70489400-70508800	Weak transcription	HMEC	breast
5	chr16:70489400-70509000	Weak transcription	NHEK	skin
6	chr16:70489400-70509400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr16:70489400-70510600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr16:70489400-70511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:70489400-70512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr16:70489400-70513000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr16:70489400-70513400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr16:70489400-70513800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr16:70489400-70513800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr16:70489400-70514200	Weak transcription	Small Intestine	intestine
15	chr16:70489400-70556400	Weak transcription	Stomach Mucosa	stomach
16	chr16:70490200-70504400	Weak transcription	Hela-S3	cervix
17	chr16:70490200-70514400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr16:70490600-70505600	Weak transcription	K562	blood
19	chr16:70495000-70504600	Weak transcription	HepG2	liver
20	chr16:70495000-70519000	Strong transcription	Primary T cells from cord blood	blood
21	chr16:70495200-70510200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr16:70495200-70510200	Weak transcription	Osteobl	bone
23	chr16:70495400-70506800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr16:70495400-70507000	Weak transcription	Fetal Brain Female	brain
25	chr16:70495400-70508800	Weak transcription	GM12878-XiMat	blood
26	chr16:70495400-70510200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr16:70495400-70510200	Weak transcription	HSMM	muscle
28	chr16:70495400-70510400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr16:70495600-70504400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr16:70495800-70512800	Weak transcription	Right Atrium	heart
31	chr16:70496800-70501800	Strong transcription	Adipose Nuclei	Adipose
32	chr16:70496800-70502000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr16:70497000-70501600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr16:70497000-70501800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr16:70497000-70502000	Strong transcription	Liver	Liver
36	chr16:70497000-70502000	Strong transcription	Spleen	Spleen
37	chr16:70497000-70503400	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr16:70497000-70507800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr16:70497000-70510200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr16:70497200-70501000	Strong transcription	Aorta	Aorta
41	chr16:70497200-70501200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr16:70497200-70501200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr16:70497200-70501600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr16:70497200-70501800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr16:70497200-70501800	Strong transcription	Brain Cingulate Gyrus	brain
46	chr16:70497200-70502000	Strong transcription	Right Ventricle	heart
47	chr16:70497200-70503200	Strong transcription	Pancreas	Pancrea
48	chr16:70497200-70503600	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr16:70497200-70504400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr16:70497200-70504800	Strong transcription	Stomach Smooth Muscle	stomach

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