Variant report

Variant	rs17881412
Chromosome Location	chr10:44870705-44870706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1065297	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793537	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900030	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11239021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239032	0.94[ASN][1000 genomes]
rs12258838	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357238	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17540465	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17878782	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17881729	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17887234	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1804429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1804430	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105397	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2522	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760669	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2839696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948878	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59675227	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60357795	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv550699	chr10:44868257-44882203	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44850600-44877600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:44859000-44871800	Weak transcription	Psoas Muscle	Psoas
3	chr10:44860000-44879000	Weak transcription	Gastric	stomach
4	chr10:44864600-44871600	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44864600-44876200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:44864600-44876800	Strong transcription	Fetal Stomach	stomach
7	chr10:44864800-44877800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:44865000-44873000	Weak transcription	Esophagus	oesophagus
9	chr10:44865400-44876200	Weak transcription	Right Atrium	heart
10	chr10:44865600-44878000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:44865800-44872200	Strong transcription	Fetal Intestine Small	intestine
12	chr10:44866000-44876200	Strong transcription	Left Ventricle	heart
13	chr10:44866000-44877600	Weak transcription	Fetal Brain Female	brain
14	chr10:44866200-44876000	Strong transcription	Osteobl	bone
15	chr10:44866400-44875600	Weak transcription	Fetal Brain Male	brain
16	chr10:44866400-44878600	Weak transcription	Liver	Liver
17	chr10:44866600-44876200	Weak transcription	Brain Germinal Matrix	brain
18	chr10:44866600-44877600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:44866800-44871800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:44866800-44875600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:44867000-44872200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:44867000-44878200	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:44867200-44872000	Strong transcription	Colon Smooth Muscle	Colon
24	chr10:44867200-44872000	Strong transcription	Fetal Lung	lung
25	chr10:44867400-44871000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:44867400-44871800	Strong transcription	Stomach Smooth Muscle	stomach
27	chr10:44867400-44875200	Strong transcription	Ovary	ovary
28	chr10:44867400-44876000	Strong transcription	Adipose Nuclei	Adipose
29	chr10:44867400-44876400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:44867400-44878000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:44867600-44871600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:44867600-44878600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:44867800-44871400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:44867800-44872400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:44867800-44875400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:44868000-44875600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:44868200-44870800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:44868200-44870800	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:44868200-44873600	Weak transcription	NHDF-Ad	bronchial
40	chr10:44868400-44872000	Strong transcription	Fetal Intestine Large	intestine
41	chr10:44868400-44873800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:44868800-44872000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:44868800-44872000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:44869000-44872000	Strong transcription	Right Ventricle	heart
45	chr10:44869200-44871200	Strong transcription	Colonic Mucosa	Colon
46	chr10:44869200-44873200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:44869400-44872000	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr10:44869400-44875800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
49	chr10:44869600-44871600	Weak transcription	NHLF	lung
50	chr10:44869600-44871800	Weak transcription	Fetal Kidney	kidney

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