The 2.0 version of rSNPBase

Variant report

Variant rs17882546
Chromosome Location chr13:96417422-96417423
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:96367600-96436000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr13:96367800-96430200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr13:96387000-96428800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr13:96394000-96435800 Weak transcription A549 lung
5 chr13:96394400-96438400 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr13:96394600-96435800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr13:96394800-96420600 Weak transcription Esophagus oesophagus
8 chr13:96398200-96424400 Weak transcription NHDF-Ad bronchial
9 chr13:96398400-96436200 Weak transcription Colon Smooth Muscle Colon
10 chr13:96398400-96439400 Weak transcription Brain Hippocampus Middle brain
11 chr13:96403200-96421800 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr13:96404000-96433200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr13:96404000-96439400 Weak transcription Thymus Thymus
14 chr13:96405400-96436800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr13:96405400-96439400 Weak transcription Brain Cingulate Gyrus brain
16 chr13:96405400-96452600 Weak transcription Psoas Muscle Psoas
17 chr13:96405600-96455800 Weak transcription Fetal Heart heart
18 chr13:96406600-96435800 Weak transcription Gastric stomach
19 chr13:96406600-96436000 Weak transcription NHLF lung
20 chr13:96406800-96435800 Weak transcription Pancreas Pancrea
21 chr13:96407000-96433400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr13:96407200-96439400 Weak transcription Brain Anterior Caudate brain
23 chr13:96408400-96443600 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr13:96408600-96430200 Weak transcription Hela-S3 cervix
25 chr13:96408600-96443200 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr13:96408600-96445400 Weak transcription K562 blood
27 chr13:96408800-96417800 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr13:96408800-96425200 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr13:96409000-96418200 Strong transcription Primary monocytes fromperipheralblood blood
30 chr13:96409600-96418200 Strong transcription Primary neutrophils fromperipheralblood blood
31 chr13:96409600-96421000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr13:96409600-96424200 Strong transcription Liver Liver
33 chr13:96409600-96424400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
34 chr13:96409800-96434200 Strong transcription Monocytes-CD14+_RO01746 blood
35 chr13:96410400-96436200 Weak transcription Aorta Aorta
36 chr13:96411000-96421000 Weak transcription Fetal Intestine Small intestine
37 chr13:96411400-96424200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr13:96411400-96439400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr13:96412000-96419200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr13:96412000-96443400 Weak transcription Colonic Mucosa Colon
41 chr13:96412200-96417600 Strong transcription Adipose Nuclei Adipose
42 chr13:96412200-96418600 Strong transcription Primary T regulatory cells fromperipheralblood blood
43 chr13:96412200-96423400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr13:96412200-96424000 Strong transcription Primary T cells from cord blood blood
45 chr13:96412400-96417600 Strong transcription Primary B cells from cord blood blood
46 chr13:96412400-96418200 Strong transcription Primary hematopoietic stem cells short term culture blood
47 chr13:96412400-96419600 Strong transcription Duodenum Mucosa Duodenum
48 chr13:96412400-96420400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr13:96412600-96417600 Strong transcription Rectal Mucosa Donor 29 rectum
50 chr13:96412800-96418800 Strong transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015