Variant report

Variant	rs17886546
Chromosome Location	chr11:102401595-102401596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:102401360-102401707	MCF10A-Er-Src	breast:	n/a	chr11:102401537-102401547 chr11:102401537-102401546 chr11:102401537-102401547 chr11:102401537-102401547 chr11:102401536-102401547 chr11:102401537-102401547
2	FOS	chr11:102401321-102401715	HUVEC	blood vessel:	n/a	chr11:102401537-102401547 chr11:102401537-102401546 chr11:102401537-102401547 chr11:102401537-102401547 chr11:102401536-102401547 chr11:102401537-102401547
3	POLR2A	chr11:102401209-102401733	HUVEC	blood vessel:	n/a	n/a
4	MAX	chr11:102401132-102401644	A549	lung:	n/a	chr11:102401538-102401547
5	FOS	chr11:102401363-102401709	MCF10A-Er-Src	breast:	n/a	chr11:102401537-102401547 chr11:102401537-102401546 chr11:102401537-102401547 chr11:102401537-102401547 chr11:102401536-102401547 chr11:102401537-102401547
6	FOSL2	chr11:102401249-102401805	A549	lung:	n/a	chr11:102401537-102401547 chr11:102401537-102401546 chr11:102401537-102401547 chr11:102401537-102401547 chr11:102401537-102401547
7	JUN	chr11:102401404-102401722	HUVEC	blood vessel:	n/a	chr11:102401537-102401547 chr11:102401537-102401546 chr11:102401537-102401547 chr11:102401537-102401547 chr11:102401537-102401547
8	EP300	chr11:102401244-102401615	GM12878	blood:	n/a	chr11:102401538-102401547
9	TBP	chr11:102401330-102401748	GM12878	blood:	n/a	n/a
10	CEBPB	chr11:102401398-102401619	Hela-S3	cervix:	n/a	n/a
11	ZNF384	chr11:102401550-102401835	GM12878	blood:	n/a	n/a
12	MAX	chr11:102401110-102401672	A549	lung:	n/a	chr11:102401538-102401547
13	FOS	chr11:102401351-102401709	MCF10A-Er-Src	breast:	n/a	chr11:102401537-102401547 chr11:102401537-102401546 chr11:102401537-102401547 chr11:102401537-102401547 chr11:102401536-102401547 chr11:102401537-102401547
14	FOS	chr11:102401377-102401709	MCF10A-Er-Src	breast:	n/a	chr11:102401537-102401547 chr11:102401537-102401546 chr11:102401537-102401547 chr11:102401537-102401547 chr11:102401536-102401547 chr11:102401537-102401547
15	MYC	chr11:102401451-102401657	MCF10A-Er-Src	breast:	n/a	chr11:102401538-102401547

Variant related genes	Relation type
MMP7	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61730848	1.00[AMR][1000 genomes]
rs7120991	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv469990	chr11:102335609-102413943	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv556150	chr11:102335609-102415859	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv468854	chr11:102336617-102413943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv556151	chr11:102336617-102413943	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102401000-102401600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:102401000-102401600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:102401000-102401800	Flanking Active TSS	HMEC	breast
4	chr11:102401000-102401800	Flanking Active TSS	HUVEC	blood vessel
5	chr11:102401000-102402200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:102401000-102402200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:102401200-102401600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:102401200-102401600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:102401200-102401600	Active TSS	Primary hematopoietic stem cells	blood
10	chr11:102401200-102401600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr11:102401200-102401600	Enhancers	GM12878-XiMat	blood
12	chr11:102401200-102401600	Flanking Active TSS	Hela-S3	cervix
13	chr11:102401200-102401800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:102401200-102401800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:102401200-102401800	Enhancers	NHEK	skin
16	chr11:102401200-102402200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:102401200-102402200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:102401200-102402200	Enhancers	Primary B cells from peripheral blood	blood
19	chr11:102401400-102401600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:102401400-102401600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:102401400-102401600	Active TSS	Pancreas	Pancrea
22	chr11:102401400-102401600	Active TSS	Monocytes-CD14+_RO01746	blood
23	chr11:102401400-102401600	Active TSS	Osteobl	bone
24	chr11:102401400-102401800	Active TSS	A549	lung

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