Variant report

Variant	rs1789176
Chromosome Location	chr11:84432068-84432069
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11826250	0.83[CHB][hapmap]
rs1789175	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4594021	0.83[CHB][hapmap]
rs55798926	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv555615	chr11:84334144-84541403	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1050367	chr11:84355133-84476542	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541107	chr11:84355133-84476542	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1043987	chr11:84355133-84516193	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv541108	chr11:84355133-84516193	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1051456	chr11:84355133-84544954	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv555617	chr11:84394622-84493877	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv898035	chr11:84420132-84497615	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv898036	chr11:84420132-84576644	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv519411	chr11:84432047-84449507	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv898037	chr11:84432047-84493877	Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84429800-84432200	Active TSS	Brain Hippocampus Middle	brain
2	chr11:84429800-84432600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:84430000-84432600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:84430400-84432600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr11:84430800-84432400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:84430800-84432400	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr11:84430800-84432400	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr11:84430800-84432600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr11:84430800-84432600	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr11:84431000-84432400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:84431000-84432400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:84431000-84432400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:84431000-84432400	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:84431000-84432400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:84431000-84432400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:84431000-84432400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:84431000-84432400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:84431000-84432400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:84431000-84432400	Active TSS	Colonic Mucosa	Colon
20	chr11:84431000-84432400	Active TSS	Psoas Muscle	Psoas
21	chr11:84431000-84432400	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr11:84431000-84432400	Active TSS	Right Atrium	heart
23	chr11:84431000-84432600	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr11:84431000-84432600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr11:84431000-84432600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:84431000-84432600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:84431000-84432600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr11:84431000-84432600	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr11:84431000-84432800	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr11:84431000-84432800	Active TSS	Rectal Smooth Muscle	rectum
31	chr11:84431200-84432200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:84431200-84432200	Active TSS	Brain Germinal Matrix	brain
33	chr11:84431200-84432200	Bivalent/Poised TSS	A549	lung
34	chr11:84431200-84432400	Active TSS	H1 Cell Line	embryonic stem cell
35	chr11:84431200-84432400	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr11:84431200-84432400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:84431200-84432400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:84431200-84432400	Active TSS	Primary T cells from cord blood	blood
39	chr11:84431200-84432400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr11:84431200-84432400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
41	chr11:84431200-84432400	Active TSS	Aorta	Aorta
42	chr11:84431200-84432400	Active TSS	Duodenum Mucosa	Duodenum
43	chr11:84431200-84432400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr11:84431200-84432400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
45	chr11:84431200-84432400	Bivalent/Poised TSS	Fetal Stomach	stomach
46	chr11:84431200-84432600	Active TSS	Primary B cells from cord blood	blood
47	chr11:84431200-84432600	Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr11:84431400-84432200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:84431400-84432200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:84431400-84432200	Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links