Variant report

Variant	rs1789654
Chromosome Location	chr11:93926252-93926253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:93925973-93927042	SK-N-SH	brain:	n/a	chr11:93926704-93926711 chr11:93926702-93926711 chr11:93926702-93926712 chr11:93926701-93926713 chr11:93926375-93926386 chr11:93926701-93926712 chr11:93926702-93926712 chr11:93926699-93926710 chr11:93926703-93926712
2	JUND	chr11:93926248-93926996	SK-N-SH	brain:	n/a	chr11:93926704-93926711 chr11:93926702-93926711 chr11:93926702-93926712 chr11:93926701-93926713 chr11:93926375-93926386 chr11:93926701-93926712 chr11:93926702-93926712 chr11:93926699-93926710 chr11:93926703-93926712

Variant related genes	Relation type
ENSG00000256745	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1792631	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1038294	chr11:93918837-93982605	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93913600-93929400	Weak transcription	Gastric	stomach
2	chr11:93915600-93929400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:93917600-93934200	Weak transcription	Fetal Intestine Small	intestine
4	chr11:93917800-93926400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:93919600-93926400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:93920000-93926600	Weak transcription	Fetal Brain Female	brain
7	chr11:93920200-93928000	Weak transcription	HSMMtube	muscle
8	chr11:93920400-93929400	Weak transcription	Pancreas	Pancrea
9	chr11:93920400-93933000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:93920400-93937800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:93920600-93926600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:93920600-93927800	Weak transcription	Aorta	Aorta
13	chr11:93925600-93927000	Enhancers	NHDF-Ad	bronchial
14	chr11:93925600-93927200	Enhancers	A549	lung
15	chr11:93925600-93927200	Enhancers	NHLF	lung
16	chr11:93925600-93927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:93925800-93926400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:93925800-93928600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:93926000-93926800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:93926000-93926800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:93926000-93927000	Enhancers	NH-A	brain
22	chr11:93926000-93927400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:93926200-93926400	Enhancers	Esophagus	oesophagus
24	chr11:93926200-93926400	Enhancers	Spleen	Spleen
25	chr11:93926200-93926600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:93926200-93926600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:93926200-93926600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:93926200-93926600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:93926200-93926800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:93926200-93927000	Enhancers	NHEK	skin
31	chr11:93926200-93927400	Enhancers	HMEC	breast

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