Variant report

Variant	rs1789974
Chromosome Location	chr8:107447800-107447801
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10955421	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1789977	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1806921	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1954750	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000866	0.89[EUR][1000 genomes]
rs2444314	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4734137	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734913	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734914	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7008981	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7827856	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107444800-107451400	Weak transcription	Aorta	Aorta
2	chr8:107446800-107447800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:107446800-107450200	Enhancers	Primary T cells from cord blood	blood
4	chr8:107447000-107447800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr8:107447000-107447800	Enhancers	Fetal Thymus	thymus
6	chr8:107447000-107447800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr8:107447000-107447800	Flanking Active TSS	HUVEC	blood vessel
8	chr8:107447000-107448400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:107447000-107451400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:107447200-107447800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr8:107447200-107447800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:107447200-107447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:107447200-107447800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:107447200-107447800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:107447200-107449000	Enhancers	Primary hematopoietic stem cells	blood
16	chr8:107447400-107447800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:107447400-107451800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr8:107447400-107452600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr8:107447600-107447800	Enhancers	Duodenum Mucosa	Duodenum
20	chr8:107447600-107448000	Enhancers	Thymus	Thymus
21	chr8:107447800-107448800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr8:107447800-107448800	Weak transcription	Fetal Thymus	thymus
23	chr8:107447800-107449000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:107447800-107449000	Enhancers	HUVEC	blood vessel

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