Variant report

Variant	rs1791682
Chromosome Location	chr11:66222137-66222138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66222024..66226628-chr11:66227285..66232511,5	MCF-7	breast:
2	chr11:66222052..66223574-chr11:66232694..66234966,2	K562	blood:
3	chr11:66222014..66224882-chr11:66226511..66229218,2	K562	blood:

Variant related genes	Relation type
ENSG00000174547	Chromatin interaction
ENSG00000174516	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs560577	1.00[GIH][hapmap]
rs608504	0.87[EUR][1000 genomes]
rs73503363	0.88[EUR][1000 genomes]
rs73503368	0.82[EUR][1000 genomes]
rs7935572	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv897786	chr11:66203025-66244015	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1791682	RIN1	cis	multi-tissue	Pritchard
rs1791682	RIN1	cis	Whole Blood	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66219800-66233800	Weak transcription	Aorta	Aorta
2	chr11:66221200-66222600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:66221200-66222800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:66221400-66222200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr11:66221400-66222200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr11:66221400-66222200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr11:66221400-66222200	Enhancers	Hela-S3	cervix
8	chr11:66221400-66222400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:66221400-66222600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:66221400-66222600	Enhancers	HMEC	breast
11	chr11:66221400-66222800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:66221400-66222800	Enhancers	NHEK	skin
13	chr11:66221400-66223200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:66221600-66222200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:66221600-66222400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:66221800-66222200	Enhancers	Primary T cells from cord blood	blood
17	chr11:66221800-66222600	Enhancers	Primary B cells from cord blood	blood
18	chr11:66222000-66222200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:66222000-66222200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:66222000-66222200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:66222000-66222400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:66222000-66222400	Enhancers	GM12878-XiMat	blood
23	chr11:66222000-66223600	Weak transcription	Primary B cells from peripheral blood	blood

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