Variant report

Variant	rs1792539
Chromosome Location	chr11:15168722-15168723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:15168653-15169043	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr11:15168670-15169121	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
INSC	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12275048	0.83[JPT][hapmap]
rs1714343	0.88[EUR][1000 genomes]
rs1714344	0.82[CEU][hapmap]
rs1714350	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1714352	0.93[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs1714353	0.90[ASN][1000 genomes]
rs1792536	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1792538	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530497	chr11:14641440-15200572	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv897009	chr11:15166201-15181614	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15161600-15172600	Weak transcription	Pancreas	Pancrea
2	chr11:15165200-15169400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:15166400-15168800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:15166400-15170200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:15166400-15170200	Enhancers	Osteobl	bone
6	chr11:15166400-15170400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:15166600-15169000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:15167200-15169000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:15167200-15169000	Enhancers	NHDF-Ad	bronchial
10	chr11:15167200-15182800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:15167400-15168800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:15167600-15168800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:15167600-15170400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:15167600-15171400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:15167800-15169000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:15167800-15180000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:15168000-15169400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:15168000-15170000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:15168200-15168800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr11:15168200-15169200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:15168200-15169600	Weak transcription	Brain Germinal Matrix	brain
22	chr11:15168400-15174200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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