Variant report

Variant	rs1792544
Chromosome Location	chr11:15180533-15180534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15122380..15123325-chr11:15180400..15181564,9	MCF-7	breast:
2	chr11:15122445..15123286-chr11:15180348..15181279,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1612099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1714345	0.81[CHD][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[ASN][1000 genomes]
rs1714347	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1714351	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7104355	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530497	chr11:14641440-15200572	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv897009	chr11:15166201-15181614	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15167200-15182800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15178200-15181200	Enhancers	NHDF-Ad	bronchial
3	chr11:15178200-15183600	Enhancers	NHLF	lung
4	chr11:15178400-15180600	Enhancers	NHEK	skin
5	chr11:15178400-15180800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:15178400-15180800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:15178400-15180800	Enhancers	HMEC	breast
8	chr11:15178400-15180800	Enhancers	Osteobl	bone
9	chr11:15178600-15180600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:15178600-15180800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:15178600-15180800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:15178600-15181000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:15178600-15181000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:15178800-15180600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr11:15178800-15180800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:15179200-15180600	Enhancers	Stomach Mucosa	stomach
17	chr11:15179200-15180800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:15179200-15183000	Weak transcription	Fetal Stomach	stomach
19	chr11:15179400-15180800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:15179600-15181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:15179800-15180600	Enhancers	Colonic Mucosa	Colon
22	chr11:15179800-15180800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:15180000-15180600	Enhancers	Liver	Liver
24	chr11:15180000-15180800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:15180200-15181600	Weak transcription	Fetal Lung	lung
26	chr11:15180400-15180800	Enhancers	Fetal Muscle Trunk	muscle
27	chr11:15180400-15184400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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