Variant report

Variant	rs179272
Chromosome Location	chr6:39076359-39076360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:39076271-39076364	HepG2	liver:	n/a	n/a
2	KAP1	chr6:39075897-39076555	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39074321..39077012-chr6:39271539..39273680,2	MCF-7	breast:

Variant related genes	Relation type
ANKRD18EP	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2143733	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39043400-39082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39063800-39076400	Weak transcription	HepG2	liver
3	chr6:39064800-39076800	Weak transcription	Aorta	Aorta
4	chr6:39066800-39077200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:39068200-39082000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:39068600-39077200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:39068600-39078400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:39068800-39077800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:39068800-39078200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:39069200-39076800	Weak transcription	Spleen	Spleen
11	chr6:39069400-39076800	Weak transcription	HSMMtube	muscle
12	chr6:39069400-39077600	Weak transcription	HMEC	breast
13	chr6:39069800-39081800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:39070000-39077200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:39070200-39076400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:39070200-39076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:39070200-39076600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:39070200-39078200	Weak transcription	K562	blood
19	chr6:39070200-39081600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:39070200-39081600	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:39070200-39081800	Weak transcription	NH-A	brain
22	chr6:39070400-39076800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:39070400-39077400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:39070400-39081800	Weak transcription	HUVEC	blood vessel
25	chr6:39070600-39077400	Weak transcription	HSMM	muscle
26	chr6:39070800-39081400	Weak transcription	Osteobl	bone
27	chr6:39070800-39082000	Weak transcription	NHLF	lung
28	chr6:39071000-39078600	Strong transcription	Primary T cells from cord blood	blood
29	chr6:39071200-39081400	Weak transcription	NHEK	skin
30	chr6:39071200-39082000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:39071400-39077600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:39071400-39077800	Weak transcription	Fetal Kidney	kidney
33	chr6:39071400-39078200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:39071400-39081800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:39071600-39076800	Weak transcription	Esophagus	oesophagus
36	chr6:39071600-39081600	Weak transcription	A549	lung
37	chr6:39071800-39076800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:39071800-39082000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:39072600-39076400	Weak transcription	Small Intestine	intestine
40	chr6:39072600-39076800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:39073200-39076400	Weak transcription	Fetal Brain Male	brain
42	chr6:39073200-39077200	Enhancers	Fetal Heart	heart
43	chr6:39073400-39076400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:39073400-39076800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:39073400-39076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:39073400-39076800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:39073400-39077000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:39073400-39077400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:39073400-39077600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:39073400-39081400	Weak transcription	NHDF-Ad	bronchial

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