Variant report

Variant	rs1792771
Chromosome Location	chr11:104971210-104971211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10895769	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10895770	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1483025	0.82[ASN][1000 genomes]
rs1503399	0.90[ASN][1000 genomes]
rs1503400	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1623342	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1628434	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1699080	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1699082	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1699083	0.83[ASN][1000 genomes]
rs1699084	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1699088	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1699095	0.85[ASN][1000 genomes]
rs1785864	0.87[ASN][1000 genomes]
rs1785872	0.88[ASN][1000 genomes]
rs1785873	0.90[ASN][1000 genomes]
rs1785878	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1792752	0.84[EUR][1000 genomes]
rs1792757	0.88[ASN][1000 genomes]
rs1792764	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1792765	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1792766	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1792770	0.90[ASN][1000 genomes]
rs1792773	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1847293	0.86[ASN][1000 genomes]
rs2062806	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2174158	0.88[ASN][1000 genomes]
rs2852987	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3736149	0.82[ASN][1000 genomes]
rs4534547	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4638280	0.85[EUR][1000 genomes]
rs472886	0.85[EUR][1000 genomes]
rs484345	0.85[EUR][1000 genomes]
rs489753	0.85[EUR][1000 genomes]
rs508337	0.84[EUR][1000 genomes]
rs529809	0.85[EUR][1000 genomes]
rs531589	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs562441	0.85[EUR][1000 genomes]
rs572717	0.85[EUR][1000 genomes]
rs7932543	0.86[ASN][1000 genomes]
rs7934144	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1042388	chr11:104934347-104988325	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
11	esv2756562	chr11:104937371-104981568	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
12	nsv1040275	chr11:104939029-104988325	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
13	nsv8871	chr11:104941750-104973508	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
14	nsv1054109	chr11:104948117-104976058	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
15	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv1049355	chr11:104950412-104972518	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
17	nsv442241	chr11:104950424-104972558	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
18	esv2762941	chr11:104952282-104972558	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
19	nsv524985	chr11:104960997-104991640	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
20	esv3425474	chr11:104962498-104978307	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
21	nsv975977	chr11:104971009-104972355	Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104964400-104971600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:104969600-104972200	Enhancers	NHEK	skin
3	chr11:104970000-104974200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:104970200-104971400	Enhancers	Dnd41	blood
5	chr11:104970200-104972200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:104970200-104972200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr11:104970400-104971600	Enhancers	HUVEC	blood vessel
8	chr11:104970400-104972200	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:104970400-104972200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:104970400-104972400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:104970400-104972600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr11:104970600-104972000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:104970600-104972200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:104970600-104972200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:104970800-104971600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:104970800-104971800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr11:104970800-104972000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr11:104970800-104972200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:104970800-104972400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr11:104971000-104971400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:104971000-104971400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:104971000-104971400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr11:104971000-104971400	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr11:104971000-104971600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:104971000-104971800	Enhancers	HMEC	breast
26	chr11:104971000-104972000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:104971000-104972200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:104971000-104972200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr11:104971000-104972200	Enhancers	Adipose Nuclei	Adipose
30	chr11:104971000-104972200	Enhancers	Placenta	Placenta
31	chr11:104971000-104972400	Active TSS	Duodenum Mucosa	Duodenum
32	chr11:104971200-104971400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:104971200-104971400	Enhancers	Esophagus	oesophagus
34	chr11:104971200-104972000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:104971200-104972400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

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