Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10934217	0.85[AMR][1000 genomes]
rs12486277	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs1881943	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs2613920	0.81[AMR][1000 genomes]
rs2613921	0.84[AMR][1000 genomes]
rs2613922	0.84[AMR][1000 genomes]
rs2700202	0.84[AMR][1000 genomes]
rs28645753	0.81[ASN][1000 genomes]
rs62262831	0.81[AMR][1000 genomes]
rs6438130	0.82[AMR][1000 genomes]
rs6783663	0.89[JPT][hapmap]
rs6807101	0.84[AMR][1000 genomes]
rs7632483	0.85[AMR][1000 genomes]
rs7650532	0.84[AMR][1000 genomes]
rs878460	0.84[AMR][1000 genomes]
rs9810734	0.81[CHD][hapmap];0.84[JPT][hapmap]
rs9811344	0.80[ASN][1000 genomes]
rs9829983	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs9834189	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112835800-112840600	Enhancers	Fetal Stomach	stomach
2	chr3:112836000-112837200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:112836000-112837200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:112836000-112837200	Enhancers	Osteobl	bone
5	chr3:112836000-112837600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:112836000-112837600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:112836000-112837600	Enhancers	Hela-S3	cervix
8	chr3:112836000-112837800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:112836200-112837200	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:112836200-112837400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:112836200-112837600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:112836200-112837600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:112836200-112837600	Enhancers	Adipose Nuclei	Adipose
14	chr3:112836200-112837600	Enhancers	Fetal Muscle Leg	muscle
15	chr3:112836200-112837600	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:112836400-112837200	Enhancers	Fetal Lung	lung
17	chr3:112836400-112837400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:112836400-112837400	Enhancers	Stomach Mucosa	stomach
19	chr3:112836400-112837400	Enhancers	NH-A	brain
20	chr3:112836600-112837600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:112837000-112842200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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