Variant report

Variant	rs1795545
Chromosome Location	chr12:11662152-11662153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16933841	1.00[AMR][1000 genomes]
rs16933848	1.00[AMR][1000 genomes]
rs1795544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1795546	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59368327	1.00[AMR][1000 genomes]
rs59748838	1.00[AMR][1000 genomes]
rs59982037	1.00[AMR][1000 genomes]
rs60348652	1.00[AMR][1000 genomes]
rs60749635	1.00[AMR][1000 genomes]
rs6488410	1.00[AMR][1000 genomes]
rs6488411	1.00[AMR][1000 genomes]
rs6488420	1.00[AMR][1000 genomes]
rs6488421	1.00[AMR][1000 genomes]
rs6488422	1.00[AMR][1000 genomes]
rs6488423	1.00[AMR][1000 genomes]
rs7134032	1.00[AMR][1000 genomes]
rs7305372	1.00[AMR][1000 genomes]
rs7306390	1.00[AMR][1000 genomes]
rs7313071	1.00[AMR][1000 genomes]
rs73277091	1.00[AMR][1000 genomes]
rs73278920	1.00[AMR][1000 genomes]
rs73278929	1.00[AMR][1000 genomes]
rs7971836	1.00[AMR][1000 genomes]
rs888126	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv428272	chr12:11069845-11714921	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv557572	chr12:11575570-11693121	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv469112	chr12:11575570-11711690	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv557573	chr12:11575570-11711690	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11655200-11666400	Weak transcription	Brain Anterior Caudate	brain
2	chr12:11660000-11664200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:11661000-11662600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:11661200-11662400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr12:11661200-11662400	Enhancers	NH-A	brain
6	chr12:11661200-11663000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr12:11661200-11663000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:11661400-11662200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:11661400-11662600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:11661400-11662600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr12:11661400-11662600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:11661400-11662800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:11661400-11663000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:11661400-11664400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr12:11661600-11662200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:11661600-11662200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:11661600-11662200	Enhancers	Osteobl	bone
18	chr12:11661600-11662800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr12:11661800-11662200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr12:11661800-11662600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr12:11661800-11662800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:11661800-11664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:11661800-11664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:11662000-11664000	Enhancers	Primary hematopoietic stem cells	blood

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