Variant report

Variant	rs1797063
Chromosome Location	chr6:119683010-119683011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1150133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1288090	1.00[EUR][1000 genomes]
rs1295376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1295377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1295378	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1295387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1295393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081311	1.00[EUR][1000 genomes]
rs1739469	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119671800-119689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:119673400-119690000	Weak transcription	K562	blood
3	chr6:119673600-119687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119675200-119688800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:119677000-119686000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:119677000-119691800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:119679200-119683200	Enhancers	Dnd41	blood
8	chr6:119679400-119691600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:119681000-119690200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:119681400-119684400	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:119682000-119693200	Weak transcription	Left Ventricle	heart
12	chr6:119682200-119683400	Flanking Active TSS	Fetal Heart	heart
13	chr6:119682600-119683200	Enhancers	Right Ventricle	heart
14	chr6:119682600-119684400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:119682800-119683200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:119683000-119684400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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