Variant report

Variant	rs1797543
Chromosome Location	chr12:10101854-10101855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr12:10101158-10101869	GM12878	blood:	n/a	n/a
2	EBF1	chr12:10101236-10101899	GM12878	blood:	n/a	n/a
3	SPI1	chr12:10100126-10101860	GM12878	blood:	n/a	chr12:10100493-10100506 chr12:10100492-10100505

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9907740..9910735-chr12:10101487..10103775,2	K562	blood:

Variant related genes	Relation type
CLEC12A	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12828117	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs582018	0.85[AFR][1000 genomes]
rs73048852	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10096400-10102200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:10096400-10104800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:10098400-10103400	Enhancers	Primary T cells from cord blood	blood
4	chr12:10099400-10104800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:10099600-10102400	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:10099600-10102400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:10099800-10102000	Enhancers	Primary B cells from cord blood	blood
8	chr12:10100400-10102200	Flanking Active TSS	GM12878-XiMat	blood
9	chr12:10100400-10102200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr12:10100400-10102800	Enhancers	Primary hematopoietic stem cells	blood
11	chr12:10100600-10104800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr12:10100600-10104800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr12:10100800-10102000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr12:10100800-10103600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr12:10100800-10104800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr12:10101000-10102000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:10101000-10102200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr12:10101000-10102600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:10101000-10104800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr12:10101200-10102000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:10101200-10102000	Enhancers	Dnd41	blood
22	chr12:10101400-10102000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:10101400-10102200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr12:10101600-10102800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr12:10101600-10103000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr12:10101800-10102000	Enhancers	Placenta	Placenta
27	chr12:10101800-10104800	Enhancers	Fetal Thymus	thymus

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