Variant report

Variant	rs1801581
Chromosome Location	chr1:94512565-94512566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17392507	0.83[EUR][1000 genomes]
rs41292683	0.83[EUR][1000 genomes]
rs4147835	0.83[EUR][1000 genomes]
rs55712710	0.90[EUR][1000 genomes]
rs56197337	0.83[EUR][1000 genomes]
rs56375042	0.83[EUR][1000 genomes]
rs6658767	1.00[AFR][1000 genomes]
rs72725166	0.93[EUR][1000 genomes]
rs72725167	0.83[EUR][1000 genomes]
rs72725169	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871172	chr1:94504545-94535546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94505600-94514200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:94505800-94523600	Weak transcription	Psoas Muscle	Psoas
3	chr1:94506600-94513200	Weak transcription	Fetal Heart	heart
4	chr1:94508800-94513600	Enhancers	HUVEC	blood vessel
5	chr1:94509600-94516800	Enhancers	Fetal Muscle Leg	muscle
6	chr1:94509800-94514800	Enhancers	Placenta	Placenta
7	chr1:94509800-94515800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:94509800-94516800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:94510000-94514600	Enhancers	Left Ventricle	heart
10	chr1:94510000-94517400	Enhancers	NHDF-Ad	bronchial
11	chr1:94510400-94515200	Weak transcription	Fetal Lung	lung
12	chr1:94511000-94513800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:94511200-94513800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:94511600-94512800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:94511600-94513000	Weak transcription	Right Ventricle	heart
16	chr1:94511600-94513200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:94511600-94513200	Weak transcription	Spleen	Spleen
18	chr1:94511600-94513400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:94511600-94513400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:94511600-94513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:94511600-94513600	Weak transcription	Aorta	Aorta
22	chr1:94511600-94513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr1:94511600-94513800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:94511600-94513800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:94511600-94513800	Enhancers	Fetal Muscle Trunk	muscle
26	chr1:94511600-94514000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:94511600-94514000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:94511600-94514000	Weak transcription	Pancreas	Pancrea
29	chr1:94511600-94514200	Weak transcription	HSMMtube	muscle
30	chr1:94511600-94514400	Weak transcription	Fetal Intestine Small	intestine
31	chr1:94511600-94515400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:94511600-94515400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:94511600-94515400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr1:94511600-94515400	Weak transcription	A549	lung
35	chr1:94511600-94515800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr1:94511600-94515800	Weak transcription	Stomach Mucosa	stomach
37	chr1:94511600-94515800	Weak transcription	NHLF	lung
38	chr1:94511600-94520800	Weak transcription	Brain Angular Gyrus	brain
39	chr1:94511800-94513000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:94511800-94513000	Weak transcription	HepG2	liver
41	chr1:94511800-94513200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:94511800-94513200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:94511800-94513200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:94511800-94513200	Weak transcription	Fetal Kidney	kidney
45	chr1:94511800-94513400	Weak transcription	HSMM	muscle
46	chr1:94511800-94513400	Weak transcription	Osteobl	bone
47	chr1:94511800-94513600	Weak transcription	NH-A	brain
48	chr1:94511800-94514200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:94511800-94515200	Weak transcription	HMEC	breast
50	chr1:94511800-94515200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links