Variant report

Variant	rs1804849
Chromosome Location	chr11:64571504-64571505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64570681-64571704	H1-hESC	embryonic stem cell:	n/a	n/a
2	MTA3	chr11:64570710-64571891	GM12878	blood:	n/a	n/a
3	SIN3AK20	chr11:64570508-64571529	MCF-7	breast:	n/a	n/a
4	POLR2A	chr11:64570605-64571569	PFSK-1	brain:	n/a	n/a
5	TCF12	chr11:64570654-64571820	A549	lung:	n/a	n/a
6	MAZ	chr11:64569767-64571820	IMR90	lung:	n/a	n/a
7	CHD1	chr11:64570603-64571744	IMR90	lung:	n/a	chr11:64570937-64570947
8	RCOR1	chr11:64570653-64571589	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr11:64570691-64571546	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr11:64571214-64571659	H1-hESC	embryonic stem cell:	n/a	n/a
11	HCFC1	chr11:64570096-64571843	Hela-S3	cervix:	n/a	n/a
12	HA-E2F1	chr11:64570745-64571624	MCF-7	breast:	n/a	chr11:64570808-64570817
13	POLR2A	chr11:64570429-64571609	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr11:64570613-64571710	PANC-1	pancreas:	n/a	n/a
15	POLR2A	chr11:64570750-64571566	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr11:64570777-64571572	K562	blood:	n/a	n/a
17	GTF2F1	chr11:64570802-64571523	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr11:64570690-64571583	PANC-1	pancreas:	n/a	n/a
19	POLR2A	chr11:64570735-64571531	GM12891	blood:	n/a	n/a
20	POLR2A	chr11:64570727-64571657	PFSK-1	brain:	n/a	n/a
21	POLR2A	chr11:64570316-64571576	HUVEC	blood vessel:	n/a	n/a
22	POLR2A	chr11:64571485-64571581	HUVEC	blood vessel:	n/a	n/a
23	SP4	chr11:64570749-64571559	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr11:64570363-64571619	SK-N-MC	brain:	n/a	n/a
25	KAP1	chr11:64570874-64571548	U2OS	brain:	n/a	n/a
26	POLR2A	chr11:64570266-64571508	K562	blood:	n/a	n/a

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64567558..64572906-chr11:64572928..64575629,5	MCF-7	breast:
2	chr11:64570704..64572363-chr11:64947696..64949572,2	MCF-7	breast:
3	chr11:64570822..64573255-chr11:64603149..64605696,2	K562	blood:
4	chr11:64569285..64571691-chr11:64884123..64886254,2	MCF-7	breast:
5	chr11:64571157..64572955-chr11:64582092..64585314,3	K562	blood:
6	chr11:64542437..64548103-chr11:64565883..64573066,9	K562	blood:
7	chr11:64569062..64575536-chr11:64608720..64614805,15	MCF-7	breast:
8	chr11:64556614..64564048-chr11:64568895..64571879,7	MCF-7	breast:
9	chr11:64569782..64572996-chr11:64862581..64865602,3	K562	blood:
10	chr11:64568677..64572675-chr11:64611050..64613930,4	K562	blood:
11	chr11:64571014..64575800-chr11:64609684..64614421,7	K562	blood:
12	chr11:64552481..64554054-chr11:64570042..64572639,2	MCF-7	breast:
13	chr11:64569309..64573413-chr11:64882963..64885967,3	K562	blood:
14	chr11:64543298..64549423-chr11:64566945..64572163,10	K562	blood:
15	chr11:64544683..64548200-chr11:64565443..64572182,16	MCF-7	breast:
16	chr11:64568489..64574764-chr11:64609155..64613913,19	MCF-7	breast:
17	chr11:64568159..64573413-chr11:64882450..64885409,5	K562	blood:
18	chr11:64569893..64571997-chr17:56031897..56034585,2	MCF-7	breast:
19	chr11:64084283..64086871-chr11:64570408..64572291,2	MCF-7	breast:
20	chr11:64509857..64513722-chr11:64571129..64574033,3	MCF-7	breast:
21	chr11:64570549..64572322-chr11:64863262..64865763,3	MCF-7	breast:

No data

Variant related genes	Relation type
MAP4K2	TF binding region
ENSG00000269038	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000269290	Chromatin interaction
ENSG00000180891	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000173113	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000254614	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17146564	1.00[AMR][1000 genomes]
rs71579882	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
4	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv897697	chr11:64447420-64584959	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
6	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
8	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
9	nsv555202	chr11:64477050-64573589	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv468597	chr11:64477050-64584959	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
11	nsv468598	chr11:64477050-64584959	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv555203	chr11:64477050-64584959	Strong transcription Genic enhancers Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
14	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
15	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
16	nsv897702	chr11:64532579-64584231	Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
17	nsv897703	chr11:64538346-64574200	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
18	nsv519117	chr11:64546391-64573589	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
19	nsv519478	chr11:64546391-64584987	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
20	nsv555204	chr11:64561200-64574200	Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv555205	chr11:64561200-64575505	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
22	nsv555206	chr11:64563757-64574200	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64569600-64572000	Active TSS	Small Intestine	intestine
2	chr11:64569800-64571600	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr11:64570000-64571600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:64570000-64571600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr11:64570000-64571800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr11:64570200-64571600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:64570200-64571600	Active TSS	Aorta	Aorta
8	chr11:64570400-64571800	Active TSS	Right Atrium	heart
9	chr11:64570600-64571600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:64570800-64571600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:64570800-64571600	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr11:64570800-64571600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr11:64570800-64571600	Flanking Active TSS	Stomach Mucosa	stomach
14	chr11:64570800-64571800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr11:64570800-64572000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:64571000-64571600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:64571000-64571600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr11:64571000-64571600	Flanking Active TSS	Primary B cells from peripheral blood	blood
19	chr11:64571000-64571600	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr11:64571000-64571600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:64571000-64571600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr11:64571000-64571600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr11:64571000-64571600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:64571000-64571600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr11:64571000-64571600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:64571000-64571600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:64571000-64571600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr11:64571000-64571600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:64571000-64571600	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr11:64571000-64571600	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr11:64571000-64571600	Flanking Active TSS	Fetal Intestine Large	intestine
32	chr11:64571000-64571600	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr11:64571000-64571600	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr11:64571000-64571600	Flanking Active TSS	Fetal Thymus	thymus
35	chr11:64571000-64571600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr11:64571000-64571600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr11:64571000-64571600	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr11:64571000-64571600	Flanking Active TSS	Hela-S3	cervix
39	chr11:64571000-64571600	Flanking Active TSS	HUVEC	blood vessel
40	chr11:64571000-64571600	Flanking Active TSS	Osteobl	bone
41	chr11:64571000-64571800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:64571000-64571800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr11:64571000-64571800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:64571000-64571800	Flanking Active TSS	Colon Smooth Muscle	Colon
45	chr11:64571000-64571800	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr11:64571000-64571800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr11:64571000-64571800	Enhancers	Spleen	Spleen
48	chr11:64571000-64571800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr11:64571000-64572000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:64571000-64572000	Flanking Active TSS	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links