Variant report

Variant	rs1805355
Chromosome Location	chr5:79966029-79966030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79948299..79950961-chr5:79965840..79968144,2	K562	blood:
2	chr5:79781162..79785767-chr5:79966010..79969813,8	MCF-7	breast:
3	chr5:79964449..79966419-chr5:79967043..79971001,3	MCF-7	breast:
4	chr5:79963791..79966264-chr5:79966320..79968324,2	MCF-7	breast:
5	chr5:79964150..79966462-chr5:79974912..79977180,3	MCF-7	breast:
6	chr5:79949216..79952432-chr5:79962559..79966205,4	MCF-7	breast:
7	chr5:79948299..79951672-chr5:79965840..79969088,3	K562	blood:

Variant related genes	Relation type
ENSG00000113318	Chromatin interaction
ENSG00000249042	Chromatin interaction
ENSG00000228716	Chromatin interaction
ENSG00000152380	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12652038	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1428030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2195291	0.82[CEU][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3776969	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs3797877	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797880	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3797885	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3797886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs4703815	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703816	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4704676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4704679	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6151628	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs6151639	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6151659	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6151664	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6151826	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs6864910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719004	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs836811	0.89[ASN][1000 genomes]
rs836812	0.90[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79951600-79969200	Weak transcription	Stomach Mucosa	stomach
2	chr5:79951600-79972200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:79951600-80015600	Weak transcription	Small Intestine	intestine
4	chr5:79951800-79982800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:79952200-79975400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:79952400-79967400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:79952400-79975400	Weak transcription	HSMMtube	muscle
8	chr5:79952400-79976600	Strong transcription	Fetal Thymus	thymus
9	chr5:79952400-79976800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr5:79952400-79983000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:79952600-79985200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:79952600-79991600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:79952800-79972200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:79953000-79966400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:79953200-79980800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr5:79953800-79969800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:79955400-79968800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:79956200-79979000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:79956400-80015600	Weak transcription	Psoas Muscle	Psoas
20	chr5:79958200-79968800	Weak transcription	Brain Anterior Caudate	brain
21	chr5:79958200-79971600	Strong transcription	Fetal Muscle Leg	muscle
22	chr5:79958200-79998000	Weak transcription	Fetal Brain Male	brain
23	chr5:79958800-79969800	Strong transcription	Primary T cells from cord blood	blood
24	chr5:79961000-79970200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:79961200-79966400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:79961200-79977000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:79961400-79967200	Weak transcription	K562	blood
28	chr5:79961400-79968400	Weak transcription	HUVEC	blood vessel
29	chr5:79961400-79968400	Weak transcription	NHDF-Ad	bronchial
30	chr5:79961600-79974000	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:79962000-79969800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:79962800-79968400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr5:79962800-79968600	Weak transcription	NH-A	brain
34	chr5:79962800-79969000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr5:79962800-80015600	Weak transcription	A549	lung
36	chr5:79963000-79966400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:79963000-79968400	Weak transcription	Fetal Kidney	kidney
38	chr5:79963000-79968600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:79963000-79968600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr5:79963000-79968800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:79963400-79968400	Weak transcription	Osteobl	bone
42	chr5:79963400-79968600	Weak transcription	Placenta	Placenta
43	chr5:79963600-79968600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr5:79963600-79968800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr5:79963600-79968800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:79963600-80038600	Weak transcription	Right Ventricle	heart
47	chr5:79963800-79968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr5:79963800-79968600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:79963800-79979600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr5:79964000-79968400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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