Variant report

Variant	rs1805692
Chromosome Location	chr12:9204683-9204684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1805683	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805688	0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805717	1.00[AMR][1000 genomes]
rs3026234	1.00[AFR][1000 genomes]
rs73236285	1.00[AMR][1000 genomes]
rs73238262	1.00[AMR][1000 genomes]
rs73238276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9178400-9216400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:9199600-9207000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:9199600-9216200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:9199800-9216200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:9199800-9216200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:9199800-9216600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:9200000-9216000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:9200000-9216200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr12:9200000-9216200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr12:9200000-9216200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr12:9202000-9216600	Weak transcription	Left Ventricle	heart
12	chr12:9202200-9207400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr12:9202200-9216200	Weak transcription	Primary T cells from cord blood	blood
14	chr12:9202200-9216200	Weak transcription	Adipose Nuclei	Adipose
15	chr12:9202400-9216000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:9203600-9205000	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr12:9203600-9205800	Enhancers	Fetal Muscle Leg	muscle
18	chr12:9204200-9205800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:9204200-9216800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr12:9204400-9205000	Weak transcription	Fetal Thymus	thymus

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