Variant report

Variant	rs180671573
Chromosome Location	chr13:54356307-54356308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53824183..53825128-chr13:54355772..54356571,3	MCF-7	breast:
2	chr13:53824070..53825129-chr13:54355995..54357044,7	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34743	chr13:54313729-54424593	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757532	chr13:54333209-54421334	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759937	chr13:54333209-54421334	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv427931	chr13:54352943-54543848	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv826646	chr13:54355102-54423461	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54353200-54356800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:54355600-54356400	Enhancers	Fetal Heart	heart
3	chr13:54355600-54356800	Enhancers	Fetal Brain Female	brain
4	chr13:54355800-54356800	Weak transcription	Fetal Brain Male	brain
5	chr13:54356000-54356400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:54356000-54356800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr13:54356000-54358800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:54356200-54356400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:54356200-54356400	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr13:54356200-54356600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr13:54356200-54356600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr13:54356200-54356600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr13:54356200-54356600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr13:54356200-54356600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr13:54356200-54356600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr13:54356200-54356600	Active TSS	Fetal Muscle Leg	muscle
17	chr13:54356200-54356800	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr13:54356200-54356800	Enhancers	Fetal Lung	lung
19	chr13:54356200-54357000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:54356200-54357200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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