Variant report

Variant	rs180698265
Chromosome Location	chr14:77622537-77622538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77618647..77620331-chr14:77622173..77624872,2	K562	blood:
2	chr14:77617758..77621204-chr14:77622193..77625212,3	MCF-7	breast:
3	chr14:77621398..77624327-chr14:77786933..77789294,4	MCF-7	breast:
4	chr14:77615331..77626101-chr14:77782557..77793016,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction
ENSG00000100577	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv976845	chr14:77621865-77649191	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77613800-77624800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:77615400-77624200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:77618200-77624200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:77620200-77624000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:77621200-77622600	Enhancers	Brain Germinal Matrix	brain
6	chr14:77621200-77624200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:77621200-77624200	Weak transcription	Fetal Brain Female	brain
8	chr14:77621400-77624200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:77621400-77624200	Weak transcription	Brain Substantia Nigra	brain
10	chr14:77621400-77624600	Weak transcription	Esophagus	oesophagus
11	chr14:77621600-77623400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:77621600-77624200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:77621600-77624200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:77621600-77624200	Weak transcription	Brain Anterior Caudate	brain
15	chr14:77621600-77624200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:77621800-77624000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:77622000-77624000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:77622000-77624200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:77622000-77624200	Weak transcription	Brain Hippocampus Middle	brain
20	chr14:77622000-77624200	Weak transcription	Fetal Brain Male	brain
21	chr14:77622000-77624800	Weak transcription	Left Ventricle	heart
22	chr14:77622000-77624800	Weak transcription	Right Atrium	heart
23	chr14:77622200-77624000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:77622200-77624200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr14:77622400-77624200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:77622400-77624200	Weak transcription	Brain Angular Gyrus	brain

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