Variant report

Variant	rs1807387
Chromosome Location	chr1:212639467-212639468
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212636838..212639720-chr1:212643460..212645324,2	K562	blood:
2	chr1:212639292..212640942-chr1:212781990..212784541,2	K562	blood:
3	chr1:212639121..212641967-chr1:212780550..212783593,4	MCF-7	breast:
4	chr1:212634664..212637460-chr1:212638255..212640310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162772	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10863970	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10863971	0.89[AMR][1000 genomes]
rs10863972	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10863975	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11119949	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11119950	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11119951	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11119953	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12030310	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12039386	1.00[AFR][1000 genomes]
rs12049168	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12143427	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12568048	0.88[AMR][1000 genomes]
rs12569340	1.00[AFR][1000 genomes]
rs1965301	0.89[AMR][1000 genomes]
rs4951602	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4951603	0.88[AMR][1000 genomes]
rs4951606	1.00[AFR][1000 genomes]
rs4951607	1.00[AFR][1000 genomes]
rs72649983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72649985	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72649986	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72649987	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72649988	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72649989	1.00[AFR][1000 genomes]
rs72649990	1.00[AFR][1000 genomes]
rs750227	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv997629	chr1:212404489-212658785	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535286	chr1:212404489-212658785	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	nsv873156	chr1:212585092-212646225	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv873157	chr1:212610755-212640982	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv873158	chr1:212610755-212646225	Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv873159	chr1:212610755-212669475	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv873160	chr1:212610755-212675482	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv873161	chr1:212610755-212683565	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv873162	chr1:212610755-212716033	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv527863	chr1:212617423-212700618	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv873163	chr1:212629935-212669475	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212629800-212640000	Weak transcription	Pancreas	Pancrea
2	chr1:212629800-212642600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:212629800-212643200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:212635600-212641800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:212635800-212640600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:212635800-212641400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:212636400-212641000	Weak transcription	Brain Angular Gyrus	brain
8	chr1:212636600-212643200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:212636800-212639800	Weak transcription	Brain Substantia Nigra	brain
10	chr1:212636800-212641600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:212636800-212644400	Enhancers	Placenta	Placenta
12	chr1:212637000-212640400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:212637400-212639800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:212637400-212640000	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:212637400-212640000	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:212637600-212640000	Weak transcription	Fetal Lung	lung
17	chr1:212637600-212644800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:212637800-212640400	Weak transcription	Brain Anterior Caudate	brain
19	chr1:212638200-212640200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:212638200-212640800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:212638200-212643400	Weak transcription	Spleen	Spleen
22	chr1:212638600-212640200	Weak transcription	Fetal Intestine Large	intestine
23	chr1:212638600-212640400	Weak transcription	NHEK	skin
24	chr1:212638600-212643200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:212638800-212640200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:212638800-212641000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:212638800-212641200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:212639000-212640200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:212639000-212640400	Enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links