Variant report

Variant	rs180744964
Chromosome Location	chr5:94894574-94894575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94893117..94894866-chr5:94974664..94977618,2	K562	blood:
2	chr5:94892616..94895050-chr5:95181504..95183040,2	MCF-7	breast:
3	chr5:94889492..94895025-chr5:94981557..94985063,8	K562	blood:
4	chr5:94889576..94892057-chr5:94893383..94894937,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175449	Chromatin interaction
ENSG00000164291	Chromatin interaction
ENSG00000198677	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830408	chr5:94894032-94915995	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94891400-94900200	Weak transcription	Gastric	stomach
2	chr5:94891800-94900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:94891800-94902800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:94892000-94906200	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:94892200-94900200	Weak transcription	Fetal Brain Female	brain
6	chr5:94892200-94902000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:94892200-94902400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:94892200-94903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:94892200-94904400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:94892200-94904400	Weak transcription	Aorta	Aorta
11	chr5:94892200-94906000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:94892200-94906800	Weak transcription	Fetal Kidney	kidney
13	chr5:94892200-94907200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:94892200-94907400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:94892200-94934400	Weak transcription	Fetal Stomach	stomach
16	chr5:94892200-94936600	Weak transcription	Fetal Lung	lung
17	chr5:94892400-94897000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:94892400-94900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:94892400-94900400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr5:94892400-94901400	Weak transcription	Primary T cells from cord blood	blood
21	chr5:94892400-94902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:94892400-94902000	Weak transcription	Liver	Liver
23	chr5:94892400-94902200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:94892400-94902400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:94892400-94902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:94892400-94902400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:94892400-94902600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:94892400-94902600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:94892400-94902600	Weak transcription	Primary B cells from cord blood	blood
30	chr5:94892400-94902600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:94892400-94902800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:94892400-94902800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:94892400-94902800	Weak transcription	Left Ventricle	heart
34	chr5:94892400-94902800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr5:94892400-94902800	Weak transcription	GM12878-XiMat	blood
36	chr5:94892400-94903000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:94892400-94903000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr5:94892400-94903000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:94892400-94903400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr5:94892400-94903400	Weak transcription	Fetal Intestine Large	intestine
41	chr5:94892400-94904200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr5:94892400-94904400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr5:94892400-94904400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:94892400-94905600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:94892400-94905800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr5:94892400-94906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:94892400-94906600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:94892400-94907600	Weak transcription	Colon Smooth Muscle	Colon
49	chr5:94892400-94908800	Weak transcription	HepG2	liver
50	chr5:94892400-94910200	Weak transcription	Duodenum Mucosa	Duodenum

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