Variant report

Variant	rs1807686
Chromosome Location	chr22:31347926-31347927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31342101..31344498-chr22:31347434..31350344,2	MCF-7	breast:
2	chr22:31346728..31348525-chr22:31359939..31362603,2	MCF-7	breast:
3	chr22:31347305..31349753-chr22:31482112..31484040,2	K562	blood:
4	chr22:31346340..31348040-chr22:31355865..31358593,2	MCF-7	breast:
5	chr22:31345220..31348145-chr22:31348354..31350638,2	K562	blood:
6	chr22:31343088..31344789-chr22:31347594..31349284,2	K562	blood:
7	chr22:31343088..31345348-chr22:31346142..31349284,4	K562	blood:
8	chr22:31339986..31349104-chr22:31474916..31484317,23	MCF-7	breast:
9	chr22:31345882..31348190-chr22:31477203..31479085,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273387	Chromatin interaction
ENSG00000183963	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10854601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11089481	0.81[AMR][1000 genomes]
rs11089484	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11703597	0.83[EUR][1000 genomes]
rs11705565	0.80[AMR][1000 genomes]
rs12166294	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12168307	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2016654	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2019171	0.81[EUR][1000 genomes]
rs2072132	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2079221	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2240175	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240176	0.83[EUR][1000 genomes]
rs2240177	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240179	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2240180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240183	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3747151	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3788426	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3804084	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3804085	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3827330	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3948685	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4820916	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4820921	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4820923	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4820925	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4820926	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5749185	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5749189	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5749192	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5749199	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5749201	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753378	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5753379	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5753383	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5753386	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5753389	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753394	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5753396	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5753407	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753408	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5753410	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5997802	0.82[EUR][1000 genomes]
rs5997807	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5997830	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5997838	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6518726	0.81[EUR][1000 genomes]
rs6518729	0.84[EUR][1000 genomes]
rs722683	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs722684	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7284767	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7289831	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7290078	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7291199	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7291361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7291471	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs737924	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs737926	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs737927	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs739896	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8004	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8135974	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8139350	0.81[EUR][1000 genomes]
rs9609183	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9609185	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9609188	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1807686	MORC2-AS1	cis	Thyroid	GTEx
rs1807686	MORC2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs1807686	MORC2-AS1	cis	Esophagus Muscularis	GTEx
rs1807686	TUG1	Cis_1M	lymphoblastoid	RTeQTL
rs1807686	MORC2-AS1	cis	Nerve Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31317600-31364000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:31319200-31350800	Strong transcription	Brain Germinal Matrix	brain
3	chr22:31319200-31351800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:31319800-31353200	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr22:31319800-31355800	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr22:31320000-31354600	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr22:31320000-31355600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr22:31320200-31353400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr22:31320200-31354800	Strong transcription	H9 Cell Line	embryonic stem cell
10	chr22:31320200-31355600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr22:31320200-31355800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr22:31320600-31354400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr22:31320600-31354400	Strong transcription	HepG2	liver
14	chr22:31320800-31352600	Strong transcription	Fetal Thymus	thymus
15	chr22:31321000-31352800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr22:31321000-31353400	Strong transcription	Fetal Intestine Large	intestine
17	chr22:31321200-31350000	Strong transcription	Fetal Lung	lung
18	chr22:31324800-31360400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr22:31325600-31351600	Strong transcription	Fetal Brain Female	brain
20	chr22:31326200-31349600	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr22:31326200-31351800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr22:31328200-31351000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
23	chr22:31337200-31352800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr22:31338400-31351600	Weak transcription	Stomach Mucosa	stomach
25	chr22:31339200-31349200	Strong transcription	K562	blood
26	chr22:31339800-31349400	Strong transcription	Dnd41	blood
27	chr22:31340000-31351000	Strong transcription	Primary B cells from cord blood	blood
28	chr22:31340200-31352800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr22:31340400-31353400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr22:31342400-31361000	Weak transcription	Small Intestine	intestine
31	chr22:31342600-31351600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr22:31343800-31353400	Strong transcription	Fetal Muscle Leg	muscle
33	chr22:31343800-31356400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr22:31344000-31348800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr22:31344000-31352800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr22:31344200-31348200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr22:31344200-31349800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr22:31344200-31352600	Strong transcription	Left Ventricle	heart
39	chr22:31344200-31352800	Strong transcription	Duodenum Mucosa	Duodenum
40	chr22:31344400-31348000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr22:31344400-31348000	Strong transcription	Fetal Intestine Small	intestine
42	chr22:31344400-31348200	Strong transcription	Fetal Stomach	stomach
43	chr22:31344600-31350800	Strong transcription	Adipose Nuclei	Adipose
44	chr22:31344600-31363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr22:31344800-31349000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr22:31344800-31349800	Strong transcription	Right Ventricle	heart
47	chr22:31344800-31354200	Strong transcription	HSMM	muscle
48	chr22:31344800-31361600	Weak transcription	Fetal Heart	heart
49	chr22:31345000-31348600	Strong transcription	Brain Angular Gyrus	brain
50	chr22:31345000-31349800	Strong transcription	Brain Inferior Temporal Lobe	brain

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