The 2.0 version of rSNPBase

Variant report

Variant rs180800357
Chromosome Location chr1:228341887-228341888
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228332800-228349800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:228333200-228342200 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:228333200-228344600 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr1:228333800-228350400 Weak transcription Primary B cells from cord blood blood
5 chr1:228336000-228342000 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:228336600-228342000 Weak transcription Primary T cells from cord blood blood
7 chr1:228336800-228350200 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:228337000-228342200 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:228337000-228343000 Weak transcription Primary monocytes fromperipheralblood blood
10 chr1:228337200-228342600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:228337200-228344400 Weak transcription Primary B cells from peripheral blood blood
12 chr1:228337400-228343000 Weak transcription Brain Germinal Matrix brain
13 chr1:228337600-228343600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr1:228337800-228342000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:228337800-228342200 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr1:228337800-228343200 Weak transcription A549 lung
17 chr1:228337800-228349800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr1:228338000-228342200 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr1:228338000-228343600 Weak transcription Fetal Brain Female brain
20 chr1:228338000-228344000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr1:228338000-228349200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:228338000-228349600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr1:228338200-228342000 Weak transcription Primary T cells fromperipheralblood blood
24 chr1:228338200-228342800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:228338200-228344800 Weak transcription Primary T regulatory cells fromperipheralblood blood
26 chr1:228338200-228344800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr1:228338200-228352400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:228338400-228349200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:228338600-228343000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:228339000-228344000 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr1:228339000-228346000 Weak transcription HMEC breast
32 chr1:228339200-228342000 Weak transcription NHEK skin
33 chr1:228339200-228342800 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr1:228339200-228342800 Weak transcription HSMM muscle
35 chr1:228339400-228342200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:228339400-228342400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:228339400-228342800 Weak transcription Osteobl bone
38 chr1:228339400-228343000 Weak transcription Stomach Mucosa stomach
39 chr1:228339400-228343400 Weak transcription Muscle Satellite Cultured Cells --
40 chr1:228339400-228344400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:228339400-228344400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:228339400-228345000 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr1:228339400-228352600 Weak transcription Brain Anterior Caudate brain
44 chr1:228339600-228342000 Weak transcription Esophagus oesophagus
45 chr1:228339600-228342800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr1:228339600-228342800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:228339600-228342800 Weak transcription Lung lung
48 chr1:228339600-228343000 Weak transcription Duodenum Mucosa Duodenum
49 chr1:228339600-228344000 Weak transcription Adipose Nuclei Adipose
50 chr1:228339600-228345600 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015