Variant report

Variant	rs180802531
Chromosome Location	chr2:48941477-48941478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010494	chr2:48767055-49027310	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1002793	chr2:48771220-49466550	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1004965	chr2:48796170-49443587	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv535684	chr2:48796170-49443587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv498119	chr2:48808834-49422647	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv833992	chr2:48814223-48998037	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv817851	chr2:48941428-48973127	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48921600-48949600	Weak transcription	Ovary	ovary
2	chr2:48938000-48944400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:48940400-48942800	Enhancers	Rectal Smooth Muscle	rectum
4	chr2:48940400-48943400	Enhancers	Colon Smooth Muscle	Colon
5	chr2:48940400-48943400	Enhancers	Fetal Stomach	stomach
6	chr2:48940600-48941600	Enhancers	Left Ventricle	heart
7	chr2:48940600-48943400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:48940600-48943400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr2:48940600-48943400	Enhancers	Fetal Muscle Leg	muscle
10	chr2:48940600-48945600	Enhancers	Fetal Lung	lung
11	chr2:48940800-48942000	Weak transcription	Right Ventricle	heart
12	chr2:48940800-48943400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:48941000-48942000	Weak transcription	Fetal Thymus	thymus
14	chr2:48941000-48942000	Weak transcription	Right Atrium	heart
15	chr2:48941000-48942800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:48941000-48942800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:48941000-48943400	Enhancers	NHLF	lung
18	chr2:48941000-48943600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:48941000-48944800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:48941000-48945000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:48941000-48946400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:48941200-48941600	Weak transcription	K562	blood
23	chr2:48941200-48943400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr2:48941200-48944400	Enhancers	Stomach Smooth Muscle	stomach
25	chr2:48941200-48944800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:48941400-48941600	Enhancers	Lung	lung
27	chr2:48941400-48941600	Enhancers	NH-A	brain
28	chr2:48941400-48942000	Weak transcription	Adipose Nuclei	Adipose
29	chr2:48941400-48942600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr2:48941400-48942600	Weak transcription	Fetal Heart	heart
31	chr2:48941400-48943200	Enhancers	Osteobl	bone

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