Variant report

Variant	rs180804
Chromosome Location	chr22:23654808-23654809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13056151	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs131694	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs180808	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv588512	chr22:22998337-23667731	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv531801	chr22:23028586-23657804	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
3	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv9876	chr22:23563331-23923059	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv482557	chr22:23584948-23741799	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv531550	chr22:23589667-24012550	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	esv2762117	chr22:23592136-23996869	Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv1063476	chr22:23596683-23989388	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv544617	chr22:23596683-23989388	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv1059951	chr22:23597270-23973060	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1060339	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv544618	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv1059384	chr22:23614429-23984195	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
15	nsv544619	chr22:23614429-23984195	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
16	nsv588601	chr22:23632665-23979219	Bivalent Enhancer Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
17	esv17028	chr22:23649375-23672982	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	nsv914578	chr22:23650987-23708020	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv914579	chr22:23650987-23995056	Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
20	esv14387	chr22:23652469-23662024	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
21	nsv979654	chr22:23652511-23693612	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23632800-23657600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr22:23635200-23657600	Weak transcription	A549	lung
3	chr22:23635600-23655200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr22:23635800-23657800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr22:23636000-23657400	Weak transcription	Small Intestine	intestine
6	chr22:23636600-23657600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr22:23636600-23657800	Weak transcription	Hela-S3	cervix
8	chr22:23637800-23657400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr22:23639800-23656200	Weak transcription	Fetal Kidney	kidney
10	chr22:23640200-23656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:23640200-23660200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr22:23642800-23656200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr22:23643000-23658200	Weak transcription	GM12878-XiMat	blood
14	chr22:23645000-23659200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr22:23645200-23655800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr22:23645200-23656200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr22:23645600-23655200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr22:23645800-23656200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr22:23646000-23655800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr22:23646000-23658400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr22:23646000-23664800	Weak transcription	HepG2	liver
22	chr22:23647000-23655400	Weak transcription	Fetal Thymus	thymus
23	chr22:23647200-23655800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr22:23647600-23656400	Weak transcription	Primary B cells from cord blood	blood
25	chr22:23647800-23656200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr22:23648000-23659200	Weak transcription	NHEK	skin
27	chr22:23648600-23655800	Weak transcription	Colonic Mucosa	Colon
28	chr22:23648600-23656000	Weak transcription	Colon Smooth Muscle	Colon
29	chr22:23648600-23658400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr22:23648800-23655600	Weak transcription	Brain Germinal Matrix	brain
31	chr22:23648800-23655800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr22:23648800-23656000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr22:23648800-23656800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr22:23648800-23657000	Weak transcription	HMEC	breast
35	chr22:23648800-23658600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr22:23649000-23657600	Weak transcription	HSMM	muscle
37	chr22:23649000-23657600	Weak transcription	Osteobl	bone
38	chr22:23649200-23655400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr22:23649200-23655800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr22:23649400-23655200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr22:23649400-23655400	Weak transcription	NHLF	lung
42	chr22:23649400-23655600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr22:23649400-23656000	Weak transcription	Brain Angular Gyrus	brain
44	chr22:23649400-23656000	Weak transcription	Brain Anterior Caudate	brain
45	chr22:23649400-23656000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr22:23649400-23656000	Weak transcription	Brain Substantia Nigra	brain
47	chr22:23649400-23656200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr22:23649400-23656200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr22:23649400-23658600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr22:23650400-23658200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links