Variant report

Variant	rs180840515
Chromosome Location	chr7:47765471-47765472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47758562..47761407-chr7:47764047..47766786,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522585	chr7:47764737-47777685	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47759600-47767000	Enhancers	Primary B cells from peripheral blood	blood
2	chr7:47763000-47766200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:47763400-47766000	Enhancers	Primary B cells from cord blood	blood
4	chr7:47763800-47765600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:47763800-47765800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:47763800-47765800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:47763800-47766000	Enhancers	Spleen	Spleen
8	chr7:47763800-47766600	Enhancers	HepG2	liver
9	chr7:47763800-47767000	Enhancers	Fetal Kidney	kidney
10	chr7:47764000-47765600	Enhancers	Stomach Mucosa	stomach
11	chr7:47764000-47766000	Enhancers	Fetal Stomach	stomach
12	chr7:47764000-47766800	Enhancers	Fetal Intestine Large	intestine
13	chr7:47764000-47766800	Enhancers	A549	lung
14	chr7:47764200-47766800	Enhancers	Fetal Intestine Small	intestine
15	chr7:47764800-47766200	Enhancers	Pancreas	Pancrea
16	chr7:47764800-47766800	Enhancers	Duodenum Mucosa	Duodenum
17	chr7:47764800-47768000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:47765000-47768200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:47765000-47769800	Weak transcription	Placenta	Placenta
20	chr7:47765000-47769800	Weak transcription	HSMMtube	muscle
21	chr7:47765200-47765600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:47765200-47766000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:47765200-47768000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:47765200-47769000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links