Variant report

Variant	rs180860377
Chromosome Location	chr6:167027541-167027542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167027136..167029744-chr6:167037956..167040696,2	K562	blood:
2	chr6:167027450..167030161-chr6:167032275..167034525,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023649	chr6:167026469-167060732	Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167012400-167034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:167012600-167027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:167012800-167027800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:167013200-167031000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:167013400-167028800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:167013600-167027800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:167013600-167028200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:167014000-167028000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:167014200-167028400	Weak transcription	Stomach Mucosa	stomach
10	chr6:167014400-167027600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:167015000-167028400	Weak transcription	Osteobl	bone
12	chr6:167016000-167027800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:167016000-167028200	Weak transcription	Gastric	stomach
14	chr6:167016000-167034400	Weak transcription	Aorta	Aorta
15	chr6:167016200-167028400	Weak transcription	NH-A	brain
16	chr6:167016600-167032800	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:167016800-167030200	Weak transcription	Brain Germinal Matrix	brain
18	chr6:167017200-167028600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:167017200-167032200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:167017400-167030400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:167017600-167028400	Weak transcription	HSMM	muscle
22	chr6:167019800-167028200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:167021200-167028400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:167021200-167028400	Weak transcription	NHDF-Ad	bronchial
25	chr6:167021800-167028200	Weak transcription	HSMMtube	muscle
26	chr6:167022400-167028400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:167022400-167029000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:167022600-167028400	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:167022800-167027600	Weak transcription	HUVEC	blood vessel
30	chr6:167022800-167027800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:167022800-167028000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:167022800-167028400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:167022800-167028800	Weak transcription	Brain Substantia Nigra	brain
34	chr6:167022800-167031200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:167023400-167030400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:167023600-167033200	Weak transcription	Primary B cells from cord blood	blood
37	chr6:167023800-167031600	Weak transcription	Fetal Brain Female	brain
38	chr6:167024000-167028000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:167024000-167028400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:167024000-167028400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:167024000-167032400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:167024000-167033600	Weak transcription	Fetal Brain Male	brain
43	chr6:167024200-167028200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:167024200-167029000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:167024200-167032800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:167024800-167030400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:167024800-167031800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:167025200-167028800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:167025200-167029600	Enhancers	Fetal Muscle Leg	muscle
50	chr6:167025200-167029800	Enhancers	Placenta Amnion	Placenta Amnion

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