Variant report

Variant	rs180863383
Chromosome Location	chr13:97887032-97887033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97885894..97888799-chr13:97909158..97911920,2	K562	blood:
2	chr13:97886043..97888309-chr13:97889917..97892337,2	MCF-7	breast:
3	chr13:97883639..97888223-chr13:97888845..97894728,6	K562	blood:
4	chr13:97884228..97886118-chr13:97886158..97888299,2	K562	blood:
5	chr13:97885101..97888223-chr13:97890978..97895082,5	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv3412816	chr13:97886873-97887527	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97876600-97893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97878200-97896600	Weak transcription	HSMMtube	muscle
3	chr13:97879800-97887800	Enhancers	Right Atrium	heart
4	chr13:97879800-97893200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:97880400-97887200	Weak transcription	Fetal Kidney	kidney
6	chr13:97880400-97888800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr13:97880400-97899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr13:97880600-97890600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:97880600-97890600	Weak transcription	GM12878-XiMat	blood
10	chr13:97881200-97889800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr13:97881800-97888000	Weak transcription	NHEK	skin
12	chr13:97881800-97890000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:97881800-97891400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:97882000-97890200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr13:97882000-97893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:97882200-97891800	Weak transcription	HMEC	breast
17	chr13:97882800-97892000	Strong transcription	Primary B cells from cord blood	blood
18	chr13:97883000-97888200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr13:97883200-97890800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:97883400-97888600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr13:97883600-97887800	Strong transcription	Primary T cells from cord blood	blood
22	chr13:97883600-97891800	Genic enhancers	Liver	Liver
23	chr13:97883800-97887800	Enhancers	Brain Substantia Nigra	brain
24	chr13:97884000-97888000	Weak transcription	Gastric	stomach
25	chr13:97884000-97888200	Weak transcription	Spleen	Spleen
26	chr13:97884000-97889400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr13:97884000-97890400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr13:97884200-97888000	Enhancers	Lung	lung
29	chr13:97884200-97891200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:97884200-97893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr13:97884400-97893000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr13:97884600-97888600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr13:97884600-97895600	Weak transcription	HSMM	muscle
34	chr13:97884600-97896000	Enhancers	Psoas Muscle	Psoas
35	chr13:97884800-97887600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:97884800-97887800	Weak transcription	NHLF	lung
37	chr13:97884800-97889000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:97885000-97891400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr13:97885200-97887200	Enhancers	Brain Angular Gyrus	brain
40	chr13:97885200-97887800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr13:97885200-97890000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr13:97885200-97891200	Weak transcription	NH-A	brain
43	chr13:97885200-97893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr13:97885400-97887800	Enhancers	Brain Anterior Caudate	brain
45	chr13:97885400-97887800	Weak transcription	Fetal Brain Male	brain
46	chr13:97885600-97887600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr13:97885600-97887800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr13:97885600-97887800	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr13:97885800-97887200	Enhancers	Small Intestine	intestine
50	chr13:97885800-97888600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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