Variant report

Variant	rs1808784
Chromosome Location	chr15:40167053-40167054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40159004..40160839-chr15:40165327..40167555,2	K562	blood:
2	chr15:40093805..40094865-chr15:40166415..40167459,6	MCF-7	breast:
3	chr15:40093806..40094417-chr15:40166891..40167777,2	K562	blood:
4	chr15:40081168..40081951-chr15:40166868..40167816,2	K562	blood:
5	chr15:40166842..40170366-chr15:40176074..40178554,3	MCF-7	breast:
6	chr15:40093787..40094345-chr15:40166912..40167471,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7162104	1.00[AMR][1000 genomes]
rs7163303	1.00[AMR][1000 genomes]
rs7184017	1.00[AMR][1000 genomes]
rs8030203	1.00[AMR][1000 genomes]
rs9744395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40147400-40167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:40150000-40171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:40153000-40170000	Weak transcription	NH-A	brain
4	chr15:40153200-40169800	Weak transcription	NHEK	skin
5	chr15:40160800-40169000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:40162400-40169200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:40162400-40187000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:40162600-40169600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:40162600-40170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:40163200-40169600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:40163200-40174200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:40163800-40169600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:40164200-40169200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:40164600-40169400	Weak transcription	K562	blood
15	chr15:40164600-40176000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:40164800-40175000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:40165000-40169200	Weak transcription	HSMMtube	muscle
18	chr15:40165000-40176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:40165200-40176200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:40166200-40167400	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr15:40166200-40167400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:40166200-40168000	Strong transcription	HSMM	muscle
23	chr15:40166800-40167200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:40166800-40167400	Enhancers	Osteobl	bone
25	chr15:40166800-40167600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:40166800-40169000	Weak transcription	NHLF	lung
27	chr15:40166800-40172800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:40167000-40167200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:40167000-40167800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:40167000-40169000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:40167000-40169400	Weak transcription	NHDF-Ad	bronchial

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