Variant report

Variant	rs180930280
Chromosome Location	chr6:109934578-109934579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109932824..109934658-chr6:109936171..109939061,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109923600-109952600	Weak transcription	Right Ventricle	heart
2	chr6:109926800-109935400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:109927600-109935200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:109928000-109966400	Weak transcription	Pancreas	Pancrea
5	chr6:109932200-109936400	Weak transcription	Fetal Kidney	kidney
6	chr6:109932400-109935800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:109932600-109936000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:109933000-109935200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:109933000-109935200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:109933000-109935200	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:109933000-109935200	Weak transcription	Esophagus	oesophagus
12	chr6:109933000-109935400	Weak transcription	Small Intestine	intestine
13	chr6:109933000-109935600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:109933000-109936800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:109933000-109936800	Weak transcription	Spleen	Spleen
16	chr6:109933000-109937000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:109933000-109939400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:109933000-109948800	Weak transcription	Thymus	Thymus
19	chr6:109933000-109962800	Weak transcription	Left Ventricle	heart
20	chr6:109933000-109966400	Weak transcription	Brain Germinal Matrix	brain
21	chr6:109933000-109985200	Weak transcription	Psoas Muscle	Psoas
22	chr6:109933200-109935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:109933800-109935400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:109933800-109951400	Weak transcription	Primary B cells from cord blood	blood
25	chr6:109934000-109935600	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links