Variant report

Variant	rs180932418
Chromosome Location	chrX:73563750-73563751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:55)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:55 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chrX:73563653-73564185	A549	lung:	n/a	n/a
2	STAT3	chrX:73563709-73564111	MCF10A-Er-Src	breast:	n/a	n/a
3	SPI1	chrX:73563705-73564178	GM12878	blood:	n/a	n/a
4	EBF1	chrX:73563706-73564076	GM12878	blood:	n/a	chrX:73563893-73563904
5	RAD21	chrX:73563740-73564249	H1-hESC	embryonic stem cell:	n/a	n/a
6	GATA3	chrX:73563562-73564316	A549	lung:	n/a	n/a
7	CEBPB	chrX:73563699-73564161	A549	lung:	n/a	n/a
8	SMC3	chrX:73563627-73564590	SK-N-SH	brain:	n/a	n/a
9	NFIC	chrX:73563716-73564177	GM12878	blood:	n/a	n/a
10	GATA3	chrX:73563674-73564202	MCF-7	breast:	n/a	n/a
11	RAD21	chrX:73563621-73564473	SK-N-SH	brain:	n/a	n/a
12	REST	chrX:73563716-73564147	A549	lung:	n/a	n/a
13	POLR2A	chrX:73563641-73564244	PANC-1	pancreas:	n/a	n/a
14	SP1	chrX:73563599-73564244	A549	lung:	n/a	n/a
15	FOS	chrX:73563683-73564093	HUVEC	blood vessel:	n/a	n/a
16	CEBPB	chrX:73563671-73564067	IMR90	lung:	n/a	n/a
17	FOS	chrX:73563679-73564087	MCF10A-Er-Src	breast:	n/a	n/a
18	RAD21	chrX:73563702-73564220	Hela-S3	cervix:	n/a	n/a
19	FOSL2	chrX:73563544-73564209	A549	lung:	n/a	n/a
20	SIN3AK20	chrX:73563621-73564127	MCF-7	breast:	n/a	n/a
21	POLR2A	chrX:73563717-73564139	U87	brain:	n/a	n/a
22	CTCF	chrX:73563180-73564565	SK-N-SH	brain:	n/a	n/a
23	RAD21	chrX:73563718-73564298	H1-hESC	embryonic stem cell:	n/a	n/a
24	RCOR1	chrX:73563749-73564166	Hela-S3	cervix:	n/a	n/a
25	SETDB1	chrX:73563437-73564349	U2OS	brain:	n/a	n/a
26	MYC	chrX:73563726-73564132	MCF10A-Er-Src	breast:	n/a	n/a
27	STAT3	chrX:73563722-73564158	MCF10A-Er-Src	breast:	n/a	n/a
28	GABPA	chrX:73563705-73564104	SK-N-SH	brain:	n/a	n/a
29	BCL3	chrX:73563586-73564233	A549	lung:	n/a	n/a
30	RAD21	chrX:73563628-73564357	HCT-116	colon:	n/a	n/a
31	POLR2A	chrX:73563742-73564077	U87	brain:	n/a	n/a
32	SPI1	chrX:73563408-73564254	HL-60	blood:	n/a	n/a
33	EP300	chrX:73563599-73564201	A549	lung:	n/a	n/a
34	KAP1	chrX:73563396-73564200	U2OS	brain:	n/a	n/a
35	POLR2A	chrX:73563649-73564185	PANC-1	pancreas:	n/a	n/a
36	RAD21	chrX:73563658-73564252	A549	lung:	n/a	n/a
37	MYC	chrX:73563693-73564146	MCF10A-Er-Src	breast:	n/a	n/a
38	GABPA	chrX:73563742-73564118	Hela-S3	cervix:	n/a	n/a
39	TCF12	chrX:73563509-73564286	A549	lung:	n/a	n/a
40	FOS	chrX:73563633-73564172	MCF10A-Er-Src	breast:	n/a	n/a
41	CCNT2	chrX:73563336-73564150	K562	blood:	n/a	n/a
42	EBF1	chrX:73563717-73564118	GM12878	blood:	n/a	chrX:73563893-73563904
43	CTCF	chrX:73563631-73564447	A549	lung:	n/a	n/a
44	BCL3	chrX:73563545-73564257	A549	lung:	n/a	n/a
45	PRDM1	chrX:73563734-73564101	Hela-S3	cervix:	n/a	chrX:73563912-73563927
46	NFIC	chrX:73563716-73564373	ECC-1	luminal epithelium:	n/a	n/a
47	STAT3	chrX:73563745-73564097	MCF10A-Er-Src	breast:	n/a	n/a
48	FOS	chrX:73563609-73564138	MCF10A-Er-Src	breast:	n/a	n/a
49	KAP1	chrX:73563306-73564318	HEK293	kidney:	n/a	n/a
50	SP1	chrX:73563693-73564213	A549	lung:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73075052..73075793-chrX:73563582..73564389,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000226515	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv520605	chrX:73549327-73569476	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73562600-73564200	Enhancers	Stomach Mucosa	stomach
2	chrX:73562600-73564600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chrX:73562800-73564600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chrX:73562800-73564600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chrX:73562800-73564600	Enhancers	Hela-S3	cervix
6	chrX:73563000-73563800	Enhancers	HUVEC	blood vessel
7	chrX:73563200-73563800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chrX:73563200-73563800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chrX:73563200-73563800	Enhancers	NH-A	brain
10	chrX:73563200-73564000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chrX:73563200-73564000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chrX:73563200-73564400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chrX:73563200-73564600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chrX:73563200-73564600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chrX:73563200-73564600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chrX:73563400-73563800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chrX:73563400-73563800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chrX:73563400-73563800	Enhancers	Muscle Satellite Cultured Cells	--
19	chrX:73563400-73563800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chrX:73563400-73563800	Flanking Active TSS	A549	lung
21	chrX:73563400-73564000	Enhancers	Primary hematopoietic stem cells	blood
22	chrX:73563400-73564000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chrX:73563400-73564000	Enhancers	Dnd41	blood
24	chrX:73563400-73564200	Enhancers	Adipose Nuclei	Adipose
25	chrX:73563400-73564200	Enhancers	Osteobl	bone
26	chrX:73563600-73564000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chrX:73563600-73564200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chrX:73563600-73564600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chrX:73563600-73568800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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