Variant report

Variant	rs180952483
Chromosome Location	chr22:27610360-27610361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:27602742..27604550-chr22:27607695..27610449,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917333	chr22:26931825-27692024	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	142 gene(s)	inside rSNPs	diseases
2	esv34168	chr22:27289097-27678031	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1064910	chr22:27609597-27648408	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27606800-27620000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:27607000-27611400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr22:27607200-27610400	Enhancers	Fetal Intestine Large	intestine
4	chr22:27607600-27611400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr22:27608000-27611600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr22:27608000-27611600	Enhancers	Osteobl	bone
7	chr22:27608000-27611800	Enhancers	Adipose Nuclei	Adipose
8	chr22:27608200-27610400	Enhancers	NH-A	brain
9	chr22:27608200-27611000	Enhancers	Fetal Muscle Leg	muscle
10	chr22:27608200-27611200	Enhancers	Spleen	Spleen
11	chr22:27608200-27611600	Enhancers	Ovary	ovary
12	chr22:27608200-27611800	Enhancers	Fetal Stomach	stomach
13	chr22:27608600-27611000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr22:27608600-27611200	Enhancers	Stomach Smooth Muscle	stomach
15	chr22:27608600-27612200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr22:27608800-27611200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr22:27608800-27612800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr22:27609000-27610400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr22:27609200-27615800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr22:27609400-27611000	Enhancers	Lung	lung
21	chr22:27609400-27611200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr22:27609400-27613000	Weak transcription	A549	lung
23	chr22:27609600-27611000	Enhancers	Aorta	Aorta
24	chr22:27609600-27611000	Weak transcription	Colon Smooth Muscle	Colon
25	chr22:27609600-27611000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr22:27610000-27610800	Enhancers	Fetal Lung	lung
27	chr22:27610000-27611200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr22:27610000-27613400	Weak transcription	Right Atrium	heart
29	chr22:27610200-27610600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr22:27610200-27616000	Weak transcription	Fetal Intestine Small	intestine

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