The 2.0 version of rSNPBase

Variant report

Variant rs180956345
Chromosome Location chr1:159012876-159012877
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:158980200-159025400 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:158982600-159027400 Weak transcription Fetal Kidney kidney
3 chr1:158984200-159024200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:158984800-159027400 Weak transcription Psoas Muscle Psoas
5 chr1:158985400-159023800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:158986000-159016200 Weak transcription Stomach Mucosa stomach
7 chr1:158988200-159016600 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr1:158988600-159024000 Strong transcription Primary hematopoietic stem cells short term culture blood
9 chr1:158993000-159023200 Strong transcription Monocytes-CD14+_RO01746 blood
10 chr1:158997600-159017000 Strong transcription Primary B cells from cord blood blood
11 chr1:158998400-159024000 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:158998600-159014600 Strong transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:158998600-159015600 Strong transcription Primary T helper cells fromperipheralblood blood
14 chr1:158998800-159014000 Strong transcription Primary T cells from cord blood blood
15 chr1:158998800-159033800 Weak transcription Fetal Brain Female brain
16 chr1:158999000-159014400 Strong transcription Fetal Intestine Large intestine
17 chr1:158999000-159022800 Strong transcription Primary neutrophils fromperipheralblood blood
18 chr1:158999200-159023800 Strong transcription Duodenum Smooth Muscle Duodenum
19 chr1:158999400-159013000 Strong transcription Fetal Adrenal Gland Adrenal Gland
20 chr1:158999600-159013000 Strong transcription Sigmoid Colon Sigmoid Colon
21 chr1:159000000-159026200 Strong transcription Breast Myoepithelial Primary Cells Breast
22 chr1:159000200-159013200 Strong transcription Primary hematopoietic stem cells blood
23 chr1:159000200-159013400 Strong transcription Thymus Thymus
24 chr1:159000400-159014000 Strong transcription Duodenum Mucosa Duodenum
25 chr1:159000400-159024200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:159000600-159014200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr1:159000600-159020200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:159000600-159023800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr1:159001000-159016000 Strong transcription Primary T regulatory cells fromperipheralblood blood
30 chr1:159001000-159016600 Weak transcription Colon Smooth Muscle Colon
31 chr1:159001000-159027400 Weak transcription Right Ventricle heart
32 chr1:159001200-159014400 Strong transcription Ovary ovary
33 chr1:159001200-159017200 Strong transcription HUVEC blood vessel
34 chr1:159001400-159014200 Strong transcription Adipose Nuclei Adipose
35 chr1:159001400-159020200 Weak transcription Brain Anterior Caudate brain
36 chr1:159001400-159020200 Weak transcription Gastric stomach
37 chr1:159001400-159024200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
38 chr1:159001400-159036200 Weak transcription Small Intestine intestine
39 chr1:159001600-159028400 Strong transcription Fetal Thymus thymus
40 chr1:159003000-159022000 Weak transcription Fetal Brain Male brain
41 chr1:159003400-159021400 Weak transcription Rectal Smooth Muscle rectum
42 chr1:159003400-159021400 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:159004000-159013000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr1:159004600-159022800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr1:159004800-159020200 Weak transcription Colonic Mucosa Colon
46 chr1:159005400-159014000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:159005400-159023200 Weak transcription Brain Cingulate Gyrus brain
48 chr1:159005600-159027200 Weak transcription Brain Angular Gyrus brain
49 chr1:159006400-159013200 Strong transcription Lung lung
50 chr1:159006800-159024200 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015