Variant report

Variant	rs1809675
Chromosome Location	chr13:64386913-64386914
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1039005	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10507702	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12429435	1.00[ASN][1000 genomes]
rs12430241	1.00[ASN][1000 genomes]
rs12431127	1.00[ASN][1000 genomes]
rs2261309	0.88[AFR][1000 genomes]
rs2261311	0.94[ASN][1000 genomes]
rs2807121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3866531	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3922926	0.80[ASN][1000 genomes]
rs4363749	0.80[ASN][1000 genomes]
rs4884506	0.80[ASN][1000 genomes]
rs4884507	0.80[ASN][1000 genomes]
rs57311943	0.80[ASN][1000 genomes]
rs57963372	0.80[ASN][1000 genomes]
rs7985049	0.80[ASN][1000 genomes]
rs7985900	0.83[ASN][1000 genomes]
rs7986012	0.80[ASN][1000 genomes]
rs9564097	0.80[ASN][1000 genomes]
rs9564100	0.83[ASN][1000 genomes]
rs9564106	1.00[ASN][1000 genomes]
rs9564107	1.00[ASN][1000 genomes]
rs9564108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9571019	0.83[ASN][1000 genomes]
rs9571054	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1050067	chr13:64173948-64405310	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2761233	chr13:64254856-64405322	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2752418	chr13:64279132-64392221	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900317	chr13:64287383-64404330	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv900318	chr13:64287383-64411616	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv870276	chr13:64287557-64424570	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1052299	chr13:64288122-64405310	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1047233	chr13:64289304-64394120	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv900319	chr13:64290980-64387507	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv900320	chr13:64290980-64392087	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv900321	chr13:64290980-64404330	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv900322	chr13:64290980-64411616	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv900323	chr13:64290980-64513203	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv482755	chr13:64292969-64396513	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv900324	chr13:64298853-64392087	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
18	nsv1052360	chr13:64301592-64392243	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv1053812	chr13:64301592-64394120	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1038263	chr13:64301592-64405310	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv1051772	chr13:64301592-64419179	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv1042787	chr13:64301592-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	esv2760302	chr13:64301604-64405322	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	esv2757536	chr13:64303507-64387507	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
25	esv2759941	chr13:64303507-64387507	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
26	esv2754198	chr13:64303507-64424251	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv1052379	chr13:64306174-64388259	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
28	nsv1044802	chr13:64306174-64392243	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
29	nsv900325	chr13:64310757-64404330	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv900326	chr13:64310757-64411616	Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv1045877	chr13:64321869-64388259	Enhancers Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a
32	nsv1054354	chr13:64321869-64392243	Enhancers Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
33	nsv1042921	chr13:64321869-64405310	Active TSS Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
34	nsv1046923	chr13:64321869-64419179	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
35	nsv1048045	chr13:64321869-64419543	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
36	nsv1052785	chr13:64329019-64388259	Enhancers Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
37	nsv1036603	chr13:64329019-64405310	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
38	nsv1036453	chr13:64329019-64430033	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
39	nsv442313	chr13:64329093-64405322	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
40	nsv900327	chr13:64333042-64387507	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
41	nsv900328	chr13:64333042-64392087	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
42	nsv900329	chr13:64333042-64394905	Enhancers Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
43	nsv900330	chr13:64333042-64404330	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
44	nsv1048758	chr13:64344469-64387507	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
45	nsv1049653	chr13:64344469-64388259	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
46	nsv1035939	chr13:64344469-64392243	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
47	nsv1039997	chr13:64344469-64394120	Enhancers Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
48	nsv1050344	chr13:64344469-64405310	Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
49	nsv1044100	chr13:64344469-64419179	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
50	nsv1046914	chr13:64344469-64419543	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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