Variant report

Variant rs180968986
Chromosome Location chr12:40498173-40498174
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:40466400-40498200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr12:40476600-40498400 Weak transcription Fetal Stomach stomach
3 chr12:40488200-40498600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr12:40492400-40498600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr12:40492800-40498600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr12:40492800-40498600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr12:40492800-40498600 Weak transcription Lung lung
8 chr12:40494200-40498200 Weak transcription A549 lung
9 chr12:40496800-40498400 Enhancers Primary T helper cells fromperipheralblood blood
10 chr12:40496800-40498600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr12:40496800-40498600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
12 chr12:40496800-40499000 Flanking Active TSS Cortex derived primary cultured neurospheres brain
13 chr12:40496800-40500400 Active TSS Stomach Smooth Muscle stomach
14 chr12:40496800-40501600 Active TSS Brain Cingulate Gyrus brain
15 chr12:40496800-40501600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
16 chr12:40496800-40501600 Active TSS Pancreatic Islets Pancreatic Islet
17 chr12:40497000-40498200 Enhancers H1 Cell Line embryonic stem cell
18 chr12:40497000-40498200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr12:40497000-40498200 Active TSS iPS-20b Cell Line embryonic stem cell
20 chr12:40497000-40498400 Enhancers Breast Myoepithelial Primary Cells Breast
21 chr12:40497000-40498400 Enhancers Stomach Mucosa stomach
22 chr12:40497000-40498600 Enhancers Primary monocytes fromperipheralblood blood
23 chr12:40497000-40498600 Enhancers Liver Liver
24 chr12:40497000-40498600 Weak transcription Psoas Muscle Psoas
25 chr12:40497000-40498600 Active TSS Right Ventricle heart
26 chr12:40497000-40498800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr12:40497000-40498800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr12:40497000-40498800 Flanking Active TSS Hela-S3 cervix
29 chr12:40497000-40499000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
30 chr12:40497000-40500200 Active TSS Brain Angular Gyrus brain
31 chr12:40497000-40501600 Active TSS Brain Inferior Temporal Lobe brain
32 chr12:40497000-40501600 Active TSS Fetal Kidney kidney
33 chr12:40497200-40498200 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr12:40497200-40498400 Active TSS HUES6 Cell Line embryonic stem cell
35 chr12:40497200-40498400 Enhancers Fetal Muscle Leg muscle
36 chr12:40497200-40498400 Active TSS K562 blood
37 chr12:40497200-40498600 Weak transcription Pancreas Pancrea
38 chr12:40497200-40498800 Enhancers Primary T helper naive cells from peripheral blood blood
39 chr12:40497200-40499000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
40 chr12:40497200-40502200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
41 chr12:40497400-40498600 Active TSS Brain Anterior Caudate brain
42 chr12:40497400-40498800 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland
43 chr12:40497400-40498800 Enhancers Fetal Heart heart
44 chr12:40497400-40499000 Flanking Active TSS Fetal Intestine Small intestine
45 chr12:40497400-40500000 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
46 chr12:40497400-40501600 Active TSS Right Atrium heart
47 chr12:40497600-40498200 Flanking Active TSS Duodenum Smooth Muscle Duodenum
48 chr12:40497600-40498200 Flanking Active TSS Fetal Intestine Large intestine
49 chr12:40497600-40498400 Active TSS HUES64 Cell Line embryonic stem cell
50 chr12:40497600-40498400 Enhancers Adipose Nuclei Adipose

Quick Search:


  
Input of quick search could be:

what's new

Quick links