Variant report

Variant	rs180995064
Chromosome Location	chr9:117484466-117484467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117484334..117485876-chr9:117486430..117488556,2	MCF-7	breast:
2	chr9:117160409..117161990-chr9:117484451..117486830,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235119	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv825060	chr9:117483259-117484487	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117480200-117485000	Enhancers	HMEC	breast
2	chr9:117480400-117485000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:117480600-117484800	Enhancers	NHEK	skin
4	chr9:117481200-117486000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:117481400-117488800	Enhancers	NHDF-Ad	bronchial
6	chr9:117481600-117485600	Weak transcription	NH-A	brain
7	chr9:117482600-117487000	Enhancers	Osteobl	bone
8	chr9:117483400-117484600	Enhancers	Liver	Liver
9	chr9:117483400-117484600	Enhancers	Fetal Intestine Small	intestine
10	chr9:117483400-117484800	Enhancers	Fetal Intestine Large	intestine
11	chr9:117483600-117488800	Enhancers	NHLF	lung
12	chr9:117484000-117485000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:117484000-117486400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:117484200-117484600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:117484200-117484600	Flanking Active TSS	HepG2	liver
16	chr9:117484200-117485000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:117484200-117485400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
18	chr9:117484400-117484800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:117484400-117485000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:117484400-117485400	Weak transcription	Esophagus	oesophagus
21	chr9:117484400-117485400	Enhancers	Hela-S3	cervix
22	chr9:117484400-117485800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:117484400-117486200	Enhancers	Fetal Muscle Leg	muscle
24	chr9:117484400-117487000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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