Variant report

Variant	rs181052508
Chromosome Location	chr5:114881558-114881559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
FEM1C	TF binding region
ENSG00000251201	Chromatin interaction
ENSG00000243414	Chromatin interaction
ENSG00000134970	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv830455	chr5:114761542-114938284	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1032234	chr5:114785557-114911527	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1796164	chr5:114854685-114936768	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv3428371	chr5:114880442-114882878	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114880800-114881600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr5:114880800-114881800	ZNF genes & repeats	GM12878-XiMat	blood
3	chr5:114881000-114881600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chr5:114881000-114881600	ZNF genes & repeats	K562	blood
5	chr5:114881000-114881800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr5:114881000-114881800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:114881000-114881800	ZNF genes & repeats	Dnd41	blood
8	chr5:114881000-114882200	Weak transcription	Psoas Muscle	Psoas
9	chr5:114881000-114886400	Weak transcription	Stomach Mucosa	stomach
10	chr5:114881000-114893200	Weak transcription	Right Ventricle	heart
11	chr5:114881200-114881600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr5:114881200-114881600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr5:114881200-114881600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr5:114881200-114882200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:114881200-114882400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:114881200-114887200	Weak transcription	NH-A	brain
17	chr5:114881400-114886400	Weak transcription	Fetal Lung	lung
18	chr5:114881400-114886800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links