Variant report

Variant	rs1810809
Chromosome Location	chr10:94146088-94146089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11186965	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11186966	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11186967	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11186968	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11186969	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1810810	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2019640	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2257625	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2257628	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2257636	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2259053	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2259373	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2259430	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2259433	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2265199	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2771266	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2771268	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs913645	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs913647	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv975013	chr10:94137766-94200367	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94142000-94146600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:94142000-94146600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:94142800-94146600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:94142800-94146800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:94142800-94146800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:94142800-94146800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:94142800-94146800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:94143000-94146800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:94143200-94146600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:94143400-94148600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:94145400-94147000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:94145400-94147200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:94145600-94147000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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